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This page was generated on 2023-02-08 01:15:25 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the Rhisat2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rhisat2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1662/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rhisat2 1.15.0 (landing page) Charlotte Soneson
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: Rhisat2 |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rhisat2 |
| StartedAt: 2023-02-06 13:17:16 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 13:17:18 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rhisat2
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* checking for file ‘Rhisat2/DESCRIPTION’ ... OK
* preparing ‘Rhisat2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘Rhisat2’ ...
** using staged installation
** libs
/usr/bin/g++ -O3 -m64 -msse2 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64 -msse2 -funroll-loops -g3 -std=c++11\"" -std=c++11 \
-fno-strict-aliasing -DHISAT2_VERSION="\"2.2.1\"" -DBUILD_HOST="\"kunpeng1\"" -DBUILD_TIME="\"Mon 6 Feb 13:17:17 UTC 2023\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DUSESIMDE -DBOWTIE2 -DNDEBUG -Wall -DMASSIVE_DATA_RLCSA \
-I. -I third_party \
-o hisat2-build-s hisat2_build.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp hisat2_build_main.cpp \
-lpthread
g++: error: unrecognized command-line option ‘-m64’
g++: error: unrecognized command-line option ‘-msse2’
make: *** [Makefile:363: hisat2-build-s] Error 1
ERROR: compilation failed for package ‘Rhisat2’
* removing ‘/tmp/RtmpoI1TkG/Rinst169eb348aa6d79/Rhisat2’
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ERROR: package installation failed