| Back to Build/check report for BioC 3.17 | 
  | 
This page was generated on 2023-02-08 01:15:25 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the RnBeads package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RnBeads.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1698/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RnBeads 2.17.0  (landing page) Fabian Mueller 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | ERROR | |||||||||
| Package: RnBeads | 
| Version: 2.17.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RnBeads.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RnBeads_2.17.0.tar.gz | 
| StartedAt: 2023-02-07 13:45:39 -0000 (Tue, 07 Feb 2023) | 
| EndedAt: 2023-02-07 13:57:57 -0000 (Tue, 07 Feb 2023) | 
| EllapsedTime: 738.6 seconds | 
| RetCode: 1 | 
| Status: ERROR | 
| CheckDir: RnBeads.Rcheck | 
| Warnings: NA | 
##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RnBeads.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RnBeads_2.17.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/RnBeads.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘RnBeads/DESCRIPTION’ ... OK
* this is package ‘RnBeads’ version ‘2.17.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'BiocGenerics', 'S4Vectors', 'GenomicRanges', 'MASS', 'cluster',
  'ff', 'fields', 'ggplot2', 'gplots', 'grid', 'gridExtra', 'limma',
  'matrixStats', 'illuminaio', 'methylumi', 'plyr'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RnBeads’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    R     3.1Mb
    bin   1.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘qvalue’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from ‘RnBeads’ for: ‘samples’
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Killed
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Killed
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘RnBeads-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rnb.execute.pOOBAH
> ### Title: rnb.execute.pOOBAH
> ### Aliases: rnb.execute.pOOBAH
> 
> ### ** Examples
> 
> library(RnBeads.hg19) 
> data(small.example.object)
> filtered <- rnb.execute.pOOBAH(rnb.set.example)
Killed
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 ERROR
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
  2023-02-07 13:54:58     1.4  STATUS                 STARTED Computing Differential Methylation Table
  2023-02-07 13:54:58     1.4    INFO                     Conducting differential analysis using limma
  2023-02-07 13:54:58     1.4  STATUS                 COMPLETED Computing Differential Methylation Table
  2023-02-07 13:54:58     1.4  STATUS                 STARTED Computing Differential Methylation Tables (Region Level)
  2023-02-07 13:55:00     1.4  STATUS                     Computed table for tiling
  2023-02-07 13:55:00     1.4  STATUS                     Computed table for genes
  2023-02-07 13:55:00     1.4  STATUS                     Computed table for promoters
  2023-02-07 13:55:00     1.4  STATUS                     Computed table for cpgislands
  2023-02-07 13:55:00     1.4  STATUS                 COMPLETED Computing Differential Methylation Tables (Region Level)
  2023-02-07 13:55:00     1.4  STATUS             COMPLETED Comparing: KOSR vs. TeSR (based on Treatment)
  2023-02-07 13:55:00     1.4  STATUS         COMPLETED Computing differential methylation tables
  2023-02-07 13:55:00     1.4  STATUS     COMPLETED Testing function: rnb.execute.computeDiffMeth
  2023-02-07 13:55:00     1.4  STATUS     STARTED Testing function: diffVar
  2023-02-07 13:55:01     1.4  STATUS         STARTED diffVar method
  Killed
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RnBeads.Rnw’... failed to complete the test
  ‘RnBeads_Annotations.Rnw’... OK
 ERROR
Errors in running code in vignettes:
when running code in ‘RnBeads.Rnw’
  ...
8  hiPS_17b_p35_TeSR   hiPS_17b     TRUE
9       hiPS_27b_p31   hiPS_27b     TRUE
10    hES_HUES64_p19 hES_HUES64    FALSE
11 hiPS_17b_p35_KOSR   hiPS_17b     TRUE
12        hES_H9_p58     hES_H9    FALSE
> Mint <- M(rnb.set.example, row.names = TRUE)
Killed
... incomplete output.  Crash?
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 ERRORs, 7 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/RnBeads.Rcheck/00check.log’
for details.
RnBeads.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RnBeads ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘RnBeads’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RnBeads)
RnBeads.Rcheck/tests/runTests.Rout.fail
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("RnBeads")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
    IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
    I, expand.grid, unname
Attaching package: 'bit'
The following object is masked from 'package:base':
    xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpgXZSnO/ff"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: 'ff'
The following objects are masked from 'package:utils':
    write.csv, write.csv2
The following objects are masked from 'package:base':
    is.factor, is.ordered
Spam version 2.9-1 (2022-08-07) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
Attaching package: 'spam'
The following object is masked from 'package:stats4':
    mle
The following objects are masked from 'package:base':
    backsolve, forwardsolve
Try help(fields) to get started.
Attaching package: 'gplots'
The following object is masked from 'package:IRanges':
    space
The following object is masked from 'package:S4Vectors':
    space
The following object is masked from 'package:stats':
    lowess
Attaching package: 'grid'
The following object is masked from 'package:ff':
    pattern
Attaching package: 'gridExtra'
The following object is masked from 'package:BiocGenerics':
    combine
Attaching package: 'limma'
The following object is masked from 'package:BiocGenerics':
    plotMA
Welcome to Bioconductor
    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following objects are masked from 'package:matrixStats':
    anyMissing, rowMedians
Attaching package: 'scales'
The following object is masked from 'package:viridis':
    viridis_pal
Attaching package: 'AnnotationDbi'
The following object is masked from 'package:MASS':
    select
Attaching package: 'MatrixGenerics'
The following object is masked from 'package:Biobase':
    rowMedians
The following objects are masked from 'package:matrixStats':
    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars
Attaching package: 'Biostrings'
The following object is masked from 'package:grid':
    pattern
The following objects are masked from 'package:ff':
    mismatch, pattern
The following object is masked from 'package:base':
    strsplit
locfit 1.5-9.7 	 2023-01-02
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Attaching package: 'plyr'
The following object is masked from 'package:XVector':
    compact
The following object is masked from 'package:matrixStats':
    count
The following object is masked from 'package:IRanges':
    desc
The following object is masked from 'package:S4Vectors':
    rename
2023-02-07 13:54:51     1.1  STATUS STARTED Unit testing: differential
2023-02-07 13:54:51     1.1  STATUS     STARTED Testing function: rowWelchP
Loading required package: RnBeads.hg19
2023-02-07 13:54:51     1.1  STATUS     COMPLETED Testing function: rowWelchP
2023-02-07 13:54:51     1.1  STATUS     STARTED Testing function: limmaP
2023-02-07 13:54:51     1.1  STATUS     COMPLETED Testing function: limmaP
2023-02-07 13:54:51     1.1  STATUS     STARTED Testing function: computeDiffTab.extended.site
2023-02-07 13:54:51     1.1    INFO         Conducting differential analysis using limma
2023-02-07 13:54:51     1.1  STATUS     COMPLETED Testing function: computeDiffTab.extended.site
2023-02-07 13:54:51     1.1  STATUS     STARTED Testing function: computeDiffTab.default.region
2023-02-07 13:54:52     1.1    INFO         Conducting differential analysis using limma
2023-02-07 13:54:56     1.2  STATUS     COMPLETED Testing function: computeDiffTab.default.region
2023-02-07 13:54:56     1.2  STATUS     STARTED Testing function: combineTestPvalsMeth
2023-02-07 13:54:56     1.2  STATUS     COMPLETED Testing function: combineTestPvalsMeth
2023-02-07 13:54:56     1.2  STATUS     STARTED Testing function: get.adjustment.variables
2023-02-07 13:54:56     1.2  STATUS     COMPLETED Testing function: get.adjustment.variables
2023-02-07 13:54:56     1.2  STATUS     STARTED Testing function: get.comparison.info
2023-02-07 13:54:56     1.2  STATUS     COMPLETED Testing function: get.comparison.info
2023-02-07 13:54:56     1.2  STATUS     STARTED Testing function: rnb.execute.computeDiffMeth
2023-02-07 13:54:56     1.2  STATUS         STARTED Retrieving comparison info
2023-02-07 13:54:56     1.2  STATUS         COMPLETED Retrieving comparison info
2023-02-07 13:54:56     1.2  STATUS         STARTED Computing differential methylation tables
2023-02-07 13:54:56     1.2  STATUS             STARTED Comparing: hESC vs. hiPSC (based on Sample_Group)
2023-02-07 13:54:56     1.2  STATUS                 STARTED Computing Differential Methylation Table
2023-02-07 13:54:56     1.2    INFO                     Conducting differential analysis using limma
2023-02-07 13:54:56     1.2  STATUS                 COMPLETED Computing Differential Methylation Table
2023-02-07 13:54:56     1.2  STATUS                 STARTED Computing Differential Methylation Tables (Region Level)
2023-02-07 13:54:57     1.3  STATUS                     Computed table for tiling
2023-02-07 13:54:57     1.4  STATUS                     Computed table for genes
2023-02-07 13:54:57     1.4  STATUS                     Computed table for promoters
2023-02-07 13:54:58     1.4  STATUS                     Computed table for cpgislands
2023-02-07 13:54:58     1.4  STATUS                 COMPLETED Computing Differential Methylation Tables (Region Level)
2023-02-07 13:54:58     1.4  STATUS             COMPLETED Comparing: hESC vs. hiPSC (based on Sample_Group)
2023-02-07 13:54:58     1.4  STATUS             STARTED Comparing: KOSR vs. TeSR (based on Treatment)
2023-02-07 13:54:58     1.4  STATUS                 STARTED Computing Differential Methylation Table
2023-02-07 13:54:58     1.4    INFO                     Conducting differential analysis using limma
2023-02-07 13:54:58     1.4  STATUS                 COMPLETED Computing Differential Methylation Table
2023-02-07 13:54:58     1.4  STATUS                 STARTED Computing Differential Methylation Tables (Region Level)
2023-02-07 13:55:00     1.4  STATUS                     Computed table for tiling
2023-02-07 13:55:00     1.4  STATUS                     Computed table for genes
2023-02-07 13:55:00     1.4  STATUS                     Computed table for promoters
2023-02-07 13:55:00     1.4  STATUS                     Computed table for cpgislands
2023-02-07 13:55:00     1.4  STATUS                 COMPLETED Computing Differential Methylation Tables (Region Level)
2023-02-07 13:55:00     1.4  STATUS             COMPLETED Comparing: KOSR vs. TeSR (based on Treatment)
2023-02-07 13:55:00     1.4  STATUS         COMPLETED Computing differential methylation tables
2023-02-07 13:55:00     1.4  STATUS     COMPLETED Testing function: rnb.execute.computeDiffMeth
2023-02-07 13:55:00     1.4  STATUS     STARTED Testing function: diffVar
2023-02-07 13:55:01     1.4  STATUS         STARTED diffVar method
Killed
RnBeads.Rcheck/RnBeads-Ex.timings
| name | user | system | elapsed | |
| M-methods | 0 | 0 | 0 | |
| U-methods | 0.000 | 0.000 | 0.001 | |
| addDiffMethTable-RnBDiffMeth-methods | 0 | 0 | 0 | |
| addPheno-RnBSet-methods | 0 | 0 | 0 | |
| addRegionSubsegments | 0 | 0 | 0 | |
| annotation-methods | 0 | 0 | 0 | |
| assembly-methods | 0 | 0 | 0 | |
| combine.rnb.sets-methods | 0 | 0 | 0 | |
| combineTestPvalsMeth | 0.000 | 0.000 | 0.001 | |
| computeDiffTab.region | 0 | 0 | 0 | |
| computeDiffTab.site | 0 | 0 | 0 | |
| covg-methods | 0 | 0 | 0 | |
| create.densityScatter | 0 | 0 | 0 | |
| create.scatter.dens.points | 0 | 0 | 0 | |
| createReport | 0 | 0 | 0 | |
| createReportPlot | 0 | 0 | 0 | |
| downloadLolaDbs | 0 | 0 | 0 | |
| dpval-methods | 0 | 0 | 0 | |
| exportDMRs2regionFile | 0 | 0 | 0 | |
| get.adjustment.variables | 0 | 0 | 0 | |
| get.comparison.grouplabels-RnBDiffMeth-methods | 0 | 0 | 0 | |
| get.comparison.groupsizes-RnBDiffMeth-methods | 0.000 | 0.000 | 0.001 | |
| get.comparison.info | 0 | 0 | 0 | |
| get.comparisons-RnBDiffMeth-methods | 0 | 0 | 0 | |
| get.covariates.sva | 0.000 | 0.000 | 0.001 | |
| get.covg.thres-RnBDiffMeth-methods | 0 | 0 | 0 | |
| get.files | 0 | 0 | 0 | |
| get.region.types-RnBDiffMeth-methods | 0 | 0 | 0 | |
| get.site.test.method-RnBDiffMeth-methods | 0 | 0 | 0 | |
| get.table-RnBDiffMeth-methods | 0 | 0 | 0 | |
| getCellTypesFromLolaDb | 0 | 0 | 0 | |
| getNamesFromLolaDb | 0 | 0 | 0 | |
| getSubCmdTokens-ClusterArchitectureSGE-methods | 0 | 0 | 0 | |
| getSubCmdTokens-ClusterArchitectureSLURM-methods | 0 | 0 | 0 | |
| getTargetFromLolaDb | 0 | 0 | 0 | |
| has.covariates.sva | 0 | 0 | 0 | |
| hasCovg-methods | 0 | 0 | 0 | |
| includes.sites-RnBDiffMeth-methods | 0.000 | 0.000 | 0.001 | |
| is.valid-RnBDiffMeth-methods | 0 | 0 | 0 | |
| join.diffMeth-methods | 0 | 0 | 0 | |
| limmaP | 0 | 0 | 0 | |
| loadLolaDbs | 0 | 0 | 0 | |
| logger.argument | 0 | 0 | 0 | |
| logger.getfiles | 0 | 0 | 0 | |
| logger.isinitialized | 0 | 0 | 0 | |
| logger.validate.file | 0 | 0 | 0 | |
| loggerManagement | 0 | 0 | 0 | |
| loggerMessages | 0 | 0 | 0 | |
| lolaBarPlot | 0 | 0 | 0 | |
| lolaBoxPlotPerTarget | 0 | 0 | 0 | |
| lolaVolcanoPlot | 0 | 0 | 0 | |
| mergeSamples-methods | 0 | 0 | 0 | |
| meth-methods | 0 | 0 | 0 | |
| mval-methods | 0 | 0 | 0 | |
| nsites-methods | 0 | 0 | 0 | |
| parallel.getNumWorkers | 0 | 0 | 0 | |
| parallel.isEnabled | 0 | 0 | 0 | |
| parallel.setup | 0 | 0 | 0 | |
| parallel.teardown | 0 | 0 | 0 | |
| performGOEnrichment.diffVar | 0 | 0 | 0 | |
| performGOenrichment.diffMeth.entrez | 0 | 0 | 0 | |
| performGoEnrichment.diffMeth | 0 | 0 | 0 | |
| performLolaEnrichment.diffMeth | 0 | 0 | 0 | |
| performLolaEnrichment.diffVar | 0 | 0 | 0 | |
| pheno-methods | 0 | 0 | 0 | |
| qc-methods | 0 | 0 | 0 | |
| read.sample.annotation | 0 | 0 | 0 | |
| regionMapping-methods | 0 | 0 | 0 | |
| regions-methods | 0 | 0 | 0 | |
| reload-RnBDiffMeth-methods | 0 | 0 | 0 | |
| remove.regions-methods | 0 | 0 | 0 | |
| remove.samples-methods | 0 | 0 | 0 | |
| remove.sites-methods | 0 | 0 | 0 | |
| rnb.RnBSet.to.GRangesList | 0 | 0 | 0 | |
| rnb.RnBSet.to.bed | 0 | 0 | 0 | |
| rnb.RnBSet.to.bedGraph | 0 | 0 | 0 | |
| rnb.add.list | 0 | 0 | 0 | |
| rnb.add.paragraph | 0 | 0 | 0 | |
| rnb.add.reference | 0 | 0 | 0 | |
| rnb.add.section | 0 | 0 | 0 | |
| rnb.annotation.size | 0 | 0 | 0 | |
| rnb.annotation2data.frame | 0 | 0 | 0 | |
| rnb.beta2mval | 0 | 0 | 0 | |
| rnb.execute.batcheffects | 0 | 0 | 0 | |
| rnb.execute.clustering | 0 | 0 | 0 | |
| rnb.execute.computeDiffMeth | 0 | 0 | 0 | |
| rnb.execute.context.removal | 0 | 0 | 0 | |
| rnb.execute.cross.reactive.removal | 0 | 0 | 0 | |
| rnb.execute.dreduction | 0 | 0 | 0 | |
| rnb.execute.export.csv | 0 | 0 | 0 | |
| rnb.execute.greedycut | 0 | 0 | 0 | |
| rnb.execute.import | 0 | 0 | 0 | |
| rnb.execute.na.removal | 0 | 0 | 0 | |
| rnb.execute.normalization | 0 | 0 | 0 | |