| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:30 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SNPRelate package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1898/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPRelate 1.33.0 (landing page) Xiuwen Zheng
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: SNPRelate |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SNPRelate |
| StartedAt: 2023-02-06 01:51:52 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 01:52:25 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 33.6 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SNPRelate ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘SNPRelate’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_SNPRelate.c -o R_SNPRelate.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c SNPRelate.cpp -o SNPRelate.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ThreadPool.cpp -o ThreadPool.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c dGenGWAS.cpp -o dGenGWAS.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c dVect.cpp -o dVect.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genBeta.cpp -o genBeta.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genEIGMIX.cpp -o genEIGMIX.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genFst.cpp -o genFst.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genHWE.cpp -o genHWE.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genIBD.cpp -o genIBD.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genIBS.cpp -o genIBS.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genKING.cpp -o genKING.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genLD.cpp -o genLD.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genPCA.cpp -o genPCA.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/home/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -Wall -c genSlideWin.cpp -o genSlideWin.o g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate)