Back to Build/check report for BioC 3.17
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2023-02-08 01:15:31 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for STRINGdb on kunpeng1


To the developers/maintainers of the STRINGdb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STRINGdb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1969/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
STRINGdb 2.11.1  (landing page)
Damian Szklarczyk
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/STRINGdb
git_branch: master
git_last_commit: 0b33a49
git_last_commit_date: 2023-01-17 16:39:31 -0000 (Tue, 17 Jan 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: STRINGdb
Version: 2.11.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
StartedAt: 2023-02-06 15:25:38 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 15:30:55 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 316.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
###
##############################################################################
##############################################################################


* checking for file ‘STRINGdb/DESCRIPTION’ ... OK
* preparing ‘STRINGdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘STRINGdb.Rnw’ using Sweave
trying URL 'https://stringdb-static.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz'
Content type 'application/octet-stream' length 21726816 bytes (20.7 MB)
==================================================
downloaded 20.7 MB

trying URL 'https://stringdb-static.org/download/protein.info.v11.5/9606.protein.info.v11.5.txt.gz'
Content type 'application/octet-stream' length 1901833 bytes (1.8 MB)
==================================================
downloaded 1.8 MB

trying URL 'https://stringdb-static.org/download/protein.links.v11.5/9606.protein.links.v11.5.txt.gz'
Content type 'application/octet-stream' length 72718210 bytes (69.3 MB)
================================================
downloaded 67.4 MB

Warning in download.file(urlStr, temp) :
  downloaded length 70663921 != reported length 72718210
Warning in download.file(urlStr, temp) :
  URL 'https://stringdb-static.org/download/protein.links.v11.5/9606.protein.links.v11.5.txt.gz': status was 'Failure when receiving data from the peer'

Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics:
 chunk 15 (label = clustering1) 
Error in download.file(urlStr, temp) : 
  download from 'https://stringdb-static.org/download/protein.links.v11.5/9606.protein.links.v11.5.txt.gz' failed

--- failed re-building ‘STRINGdb.Rnw’

SUMMARY: processing the following file failed:
  ‘STRINGdb.Rnw’

Error: Vignette re-building failed.
Execution halted