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This page was generated on 2023-02-08 01:15:32 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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BUILD results for TCGAutils on kunpeng1


To the developers/maintainers of the TCGAutils package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAutils.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2015/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAutils 1.19.1  (landing page)
Marcel Ramos
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/TCGAutils
git_branch: master
git_last_commit: 81ebe29
git_last_commit_date: 2022-11-10 20:27:18 -0000 (Thu, 10 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: TCGAutils
Version: 1.19.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAutils
StartedAt: 2023-02-06 15:38:38 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 16:11:26 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 1967.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAutils
###
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* checking for file ‘TCGAutils/DESCRIPTION’ ... OK
* preparing ‘TCGAutils’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TCGAutils.Rmd’ using rmarkdown
trying URL 'https://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/COAD-TP/20160128/gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0.tar.gz'
Content type 'application/x-gzip' length 31302857 bytes (29.9 MB)
================
downloaded 9.7 MB

Quitting from lines 374-382 (TCGAutils.Rmd) 
Error: processing vignette 'TCGAutils.Rmd' failed with diagnostics:
download from 'https://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/COAD-TP/20160128/gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0.tar.gz' failed
--- failed re-building ‘TCGAutils.Rmd’

SUMMARY: processing the following file failed:
  ‘TCGAutils.Rmd’

Error: Vignette re-building failed.
Execution halted