Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:32 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the TCGAutils package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAutils.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2015/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TCGAutils 1.19.1 (landing page) Marcel Ramos
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
Package: TCGAutils |
Version: 1.19.1 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAutils |
StartedAt: 2023-02-06 15:38:38 -0000 (Mon, 06 Feb 2023) |
EndedAt: 2023-02-06 16:11:26 -0000 (Mon, 06 Feb 2023) |
EllapsedTime: 1967.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAutils ### ############################################################################## ############################################################################## * checking for file ‘TCGAutils/DESCRIPTION’ ... OK * preparing ‘TCGAutils’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘TCGAutils.Rmd’ using rmarkdown trying URL 'https://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/COAD-TP/20160128/gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0.tar.gz' Content type 'application/x-gzip' length 31302857 bytes (29.9 MB) ================ downloaded 9.7 MB Quitting from lines 374-382 (TCGAutils.Rmd) Error: processing vignette 'TCGAutils.Rmd' failed with diagnostics: download from 'https://gdac.broadinstitute.org/runs/analyses__2016_01_28/data/COAD-TP/20160128/gdac.broadinstitute.org_COAD-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0.tar.gz' failed --- failed re-building ‘TCGAutils.Rmd’ SUMMARY: processing the following file failed: ‘TCGAutils.Rmd’ Error: Vignette re-building failed. Execution halted