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This page was generated on 2023-02-08 01:15:34 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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CHECK results for TTMap on kunpeng1


To the developers/maintainers of the TTMap package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TTMap.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2090/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TTMap 1.21.0  (landing page)
Rachel Jeitziner
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/TTMap
git_branch: master
git_last_commit: 7851b71
git_last_commit_date: 2022-11-01 15:17:06 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: TTMap
Version: 1.21.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:TTMap.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings TTMap_1.21.0.tar.gz
StartedAt: 2023-02-07 18:22:50 -0000 (Tue, 07 Feb 2023)
EndedAt: 2023-02-07 18:27:54 -0000 (Tue, 07 Feb 2023)
EllapsedTime: 303.5 seconds
RetCode: 0
Status:   OK  
CheckDir: TTMap.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:TTMap.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings TTMap_1.21.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/TTMap.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘TTMap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TTMap’ version ‘1.21.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TTMap’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
ttmap_sgn_genes                     16.959  0.092  16.856
ttmap                               16.426  0.204  16.757
calcul_e                            15.428  0.217  15.655
control_adjustment                  12.540  0.020  12.672
hyperrectangle_deviation_assessment 11.951  0.068  12.021
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘TTMap.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

TTMap.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TTMap
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘TTMap’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TTMap)

Tests output


Example timings

TTMap.Rcheck/TTMap-Ex.timings

nameusersystemelapsed
TTMap-package0.0000.0000.001
calcul_e15.428 0.21715.655
control_adjustment12.540 0.02012.672
generate_correlation0.0020.0000.002
hyperrectangle_deviation_assessment11.951 0.06812.021
make_matrices3.8670.0443.913
ttmap16.426 0.20416.757
ttmap_sgn_genes16.959 0.09216.856
write_pcl4.3340.0484.391