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This page was generated on 2023-02-08 01:14:51 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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BUILD results for attract on kunpeng1


To the developers/maintainers of the attract package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/attract.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 96/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
attract 1.51.0  (landing page)
Samuel Zimmerman
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/attract
git_branch: master
git_last_commit: 05e02ca
git_last_commit_date: 2022-11-01 15:05:07 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: attract
Version: 1.51.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data attract
StartedAt: 2023-02-06 04:58:12 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 04:59:23 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 71.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data attract
###
##############################################################################
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* checking for file ‘attract/DESCRIPTION’ ... OK
* preparing ‘attract’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘attract.Rnw’ using Sweave
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, aperm, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff,
    sort, table, tapply, union, unique, unsplit,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname



Loading required package: illuminaHumanv1.db
Loading required package: org.Hs.eg.db


Error: processing vignette 'attract.Rnw' failed with diagnostics:
 chunk 5 (label = findAttractors) 
Error in curl::curl_fetch_memory(url, handle = handle) : 
  Timeout was reached: [rest.kegg.jp] Connection timeout after 10001 ms

--- failed re-building ‘attract.Rnw’

SUMMARY: processing the following file failed:
  ‘attract.Rnw’

Error: Vignette re-building failed.
Execution halted