Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:14:51 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
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To the developers/maintainers of the autonomics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/autonomics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 98/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
autonomics 1.7.0 (landing page) Aditya Bhagwat
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
Package: autonomics |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data autonomics |
StartedAt: 2023-02-06 04:59:13 -0000 (Mon, 06 Feb 2023) |
EndedAt: 2023-02-06 05:08:45 -0000 (Mon, 06 Feb 2023) |
EllapsedTime: 572.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data autonomics ### ############################################################################## ############################################################################## * checking for file ‘autonomics/DESCRIPTION’ ... OK * preparing ‘autonomics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘using_autonomics.Rmd’ using rmarkdown The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-1.png" but not available. The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-2.png" but not available. The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-3.png" but not available. The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-4.png" but not available. trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_counts.csv.gz?tool=geoquery' Content type 'application/x-gzip' length 8347405 bytes (8.0 MB) === downloaded 640 KB Quitting from lines 63-76 (using_autonomics.Rmd) Error: processing vignette 'using_autonomics.Rmd' failed with diagnostics: Failed to download /tmp/RtmpZcWDCu/datasets/GSE161731/GSE161731_counts.csv.gz! --- failed re-building ‘using_autonomics.Rmd’ SUMMARY: processing the following file failed: ‘using_autonomics.Rmd’ Error: Vignette re-building failed. Execution halted