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This page was generated on 2023-02-08 01:14:51 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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BUILD results for autonomics on kunpeng1


To the developers/maintainers of the autonomics package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/autonomics.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 98/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
autonomics 1.7.0  (landing page)
Aditya Bhagwat
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/autonomics
git_branch: master
git_last_commit: 648ec51
git_last_commit_date: 2022-11-01 15:24:11 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: autonomics
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data autonomics
StartedAt: 2023-02-06 04:59:13 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 05:08:45 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 572.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data autonomics
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* checking for file ‘autonomics/DESCRIPTION’ ... OK
* preparing ‘autonomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_autonomics.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-2.png" but not available.
The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-3.png" but not available.
The magick package is required to crop "/tmp/Rtmpz2beJX/Rbuild7ca793e537215/autonomics/vignettes/using_autonomics_files/figure-html/unnamed-chunk-2-4.png" but not available.
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_counts.csv.gz?tool=geoquery'
Content type 'application/x-gzip' length 8347405 bytes (8.0 MB)
===
downloaded 640 KB

Quitting from lines 63-76 (using_autonomics.Rmd) 
Error: processing vignette 'using_autonomics.Rmd' failed with diagnostics:
Failed to download /tmp/RtmpZcWDCu/datasets/GSE161731/GSE161731_counts.csv.gz!
--- failed re-building ‘using_autonomics.Rmd’

SUMMARY: processing the following file failed:
  ‘using_autonomics.Rmd’

Error: Vignette re-building failed.
Execution halted