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This page was generated on 2023-02-08 01:14:55 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
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To the developers/maintainers of the ceRNAnetsim package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ceRNAnetsim.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 286/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ceRNAnetsim 1.11.0 (landing page) Selcen Ari Yuka
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | ERROR | |||||||||
Package: ceRNAnetsim |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ceRNAnetsim.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ceRNAnetsim_1.11.0.tar.gz |
StartedAt: 2023-02-06 20:38:30 -0000 (Mon, 06 Feb 2023) |
EndedAt: 2023-02-06 20:47:27 -0000 (Mon, 06 Feb 2023) |
EllapsedTime: 537.4 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: ceRNAnetsim.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ceRNAnetsim.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ceRNAnetsim_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ceRNAnetsim.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘ceRNAnetsim/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ceRNAnetsim’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ceRNAnetsim’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed find_node_perturbation 20.413 0.035 20.455 find_targeting_nodes 12.534 0.015 12.551 simulate_vis 9.745 0.031 9.778 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘auxiliary_commands.Rmd’ using ‘UTF-8’... OK ‘basic_usage.Rmd’ using ‘UTF-8’... OK ‘convenient_iteration.Rmd’ using ‘UTF-8’... OK ‘mirtarbase_example.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: ... --- re-building ‘auxiliary_commands.Rmd’ using rmarkdown --- finished re-building ‘auxiliary_commands.Rmd’ --- re-building ‘basic_usage.Rmd’ using rmarkdown --- finished re-building ‘basic_usage.Rmd’ --- re-building ‘convenient_iteration.Rmd’ using rmarkdown --- finished re-building ‘convenient_iteration.Rmd’ --- re-building ‘mirtarbase_example.Rmd’ using rmarkdown Killed SUMMARY: processing the following file failed: ‘mirtarbase_example.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR See ‘/home/biocbuild/bbs-3.17-bioc/meat/ceRNAnetsim.Rcheck/00check.log’ for details.
ceRNAnetsim.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ceRNAnetsim ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘ceRNAnetsim’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ceRNAnetsim)
ceRNAnetsim.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ceRNAnetsim) Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: tidygraph Attaching package: 'tidygraph' The following object is masked from 'package:testthat': matches The following object is masked from 'package:stats': filter Attaching package: 'ceRNAnetsim' The following object is masked from 'package:stats': simulate > > > test_check("ceRNAnetsim") [ FAIL 0 | WARN 36 | SKIP 0 | PASS 38 ] [ FAIL 0 | WARN 36 | SKIP 0 | PASS 38 ] > > proc.time() user system elapsed 68.951 0.131 69.084
ceRNAnetsim.Rcheck/ceRNAnetsim-Ex.timings
name | user | system | elapsed | |
calc_perturbation | 2.739 | 0.004 | 2.744 | |
find_affected_nodes | 0.967 | 0.005 | 0.972 | |
find_iteration | 2.766 | 0.016 | 2.783 | |
find_node_perturbation | 20.413 | 0.035 | 20.455 | |
find_targeting_nodes | 12.534 | 0.015 | 12.551 | |
priming_graph | 1.074 | 0.007 | 1.081 | |
simulate | 1.874 | 0.005 | 1.877 | |
simulate_vis | 9.745 | 0.031 | 9.778 | |
update_how | 1.916 | 0.004 | 1.921 | |
update_nodes | 0.633 | 0.001 | 0.633 | |
update_variables | 0.596 | 0.000 | 0.596 | |
vis_graph | 1.948 | 0.003 | 1.952 | |