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This page was generated on 2023-02-08 01:15:00 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the distinct package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/distinct.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 538/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| distinct 1.11.0 (landing page) Simone Tiberi
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | ERROR | |||||||||
| Package: distinct |
| Version: 1.11.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL distinct |
| StartedAt: 2023-02-06 03:52:14 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 03:54:11 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 116.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL distinct
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘distinct’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Perm.cpp -o Perm.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Perm_covariates.cpp -o Perm_covariates.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5,
from Perm_covariates.cpp:2:
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
604 | #pragma omp parallel for
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/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
621 | #pragma omp parallel for
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/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
639 | #pragma omp parallel for
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/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
654 | #pragma omp parallel for
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/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
669 | #pragma omp parallel for
|
Perm_covariates.cpp: In function ‘arma::vec my_rint_reg(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)’:
Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates.cpp:210:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5,
from Perm_covariates_parallel.cpp:2:
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
604 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
621 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
639 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
654 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
669 | #pragma omp parallel for
|
Perm_covariates_parallel.cpp: In function ‘arma::vec my_rint_reg_parallel(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)’:
Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates_parallel.cpp:210:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Perm_parallel.cpp -o Perm_parallel.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o distinct.so Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-distinct/00new/distinct/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distinct)