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This page was generated on 2023-02-08 01:15:09 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for interacCircos on kunpeng1


To the developers/maintainers of the interacCircos package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/interacCircos.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 968/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
interacCircos 1.9.0  (landing page)
Zhe Cui
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/interacCircos
git_branch: master
git_last_commit: 40e5a98
git_last_commit_date: 2022-11-01 15:24:42 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: interacCircos
Version: 1.9.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings interacCircos_1.9.0.tar.gz
StartedAt: 2023-02-07 05:17:56 -0000 (Tue, 07 Feb 2023)
EndedAt: 2023-02-07 05:18:38 -0000 (Tue, 07 Feb 2023)
EllapsedTime: 42.1 seconds
RetCode: 0
Status:   OK  
CheckDir: interacCircos.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings interacCircos_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/interacCircos.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘interacCircos/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘interacCircos’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘interacCircos’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘interacCircos.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

interacCircos.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL interacCircos
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘interacCircos’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (interacCircos)

Tests output


Example timings

interacCircos.Rcheck/interacCircos-Ex.timings

nameusersystemelapsed
Circos0.2670.0200.297
CircosArc0.1070.0080.115
CircosAuxLine0.0860.0120.098
CircosBackground0.0960.0080.104
CircosBubble0.5070.0120.519
CircosChord0.1040.0120.115
CircosChord.p0.1040.0080.112
CircosCnv0.3030.0160.325
CircosGene0.1160.0040.120
CircosHeatmap0.5010.0160.518
CircosHistogram0.2040.0230.252
CircosLegend0.0920.0120.104
CircosLine0.4510.0120.465
CircosLink0.1000.0120.112
CircosLollipop0.2530.0120.266
CircosScatter1.4880.0051.494
CircosSnp0.6830.0120.696
CircosText0.0910.0190.110
CircosWig1.4410.0201.469