| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-08 01:15:11 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the made4 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1064/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.73.0 (landing page) Aedin Culhane
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: made4 |
| Version: 1.73.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings made4_1.73.0.tar.gz |
| StartedAt: 2023-02-07 06:30:09 -0000 (Tue, 07 Feb 2023) |
| EndedAt: 2023-02-07 06:33:22 -0000 (Tue, 07 Feb 2023) |
| EllapsedTime: 192.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: made4.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings made4_1.73.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/made4.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘made4/DESCRIPTION’ ... OK
* this is package ‘made4’ version ‘1.73.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘made4’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) NCI60.Rd:19: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:22: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:31: Escaped LaTeX specials: \$ \$
checkRd: (-1) NCI60.Rd:32: Escaped LaTeX specials: \$ \$
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checkRd: (-1) NCI60.Rd:50: Escaped LaTeX specials: \$
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checkRd: (-1) NCI60.Rd:60: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:64: Escaped LaTeX specials: \$ \$
prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples
checkRd: (-1) between.graph.Rd:17: Escaped LaTeX specials: \$ \$
checkRd: (-1) between.graph.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) between.graph.Rd:26: Escaped LaTeX specials: \$
checkRd: (-1) between.graph.Rd:32: Escaped LaTeX specials: \$ \$
checkRd: (-1) between.graph.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) bga.Rd:27: Escaped LaTeX specials: \$ \$ \$
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checkRd: (-1) do3d.Rd:22: Escaped LaTeX specials: \$ \$
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checkRd: (-1) jmol3D.Rd:14: Escaped LaTeX specials: \$ \$
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checkRd: (-1) khan.Rd:35: Escaped LaTeX specials: \$
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checkRd: (-1) ord.Rd:27: Escaped LaTeX specials: \$ \$
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checkRd: (-1) plotarrays.Rd:6: Escaped LaTeX specials: \$
checkRd: (-1) plotgenes.Rd:6: Escaped LaTeX specials: \$
checkRd: (-1) s.var.Rd:35: Escaped LaTeX specials: \$ \$ \$
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checkRd: (-1) sumstats.Rd:16: Escaped LaTeX specials: \$ \$
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* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
heatplot 3.098 0.482 5.082
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘introduction.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/made4.Rcheck/00check.log’
for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘made4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
| name | user | system | elapsed | |
| NCI60 | 0.007 | 0.000 | 0.008 | |
| bet.coinertia | 0.01 | 0.00 | 0.01 | |
| between.graph | 0.320 | 0.025 | 0.346 | |
| bga | 0.405 | 0.004 | 0.409 | |
| bga.jackknife | 1.887 | 0.060 | 1.950 | |
| bga.suppl | 0.475 | 0.008 | 0.499 | |
| cia | 0.199 | 0.012 | 0.214 | |
| commonMap | 0.030 | 0.004 | 0.035 | |
| comparelists | 0.001 | 0.000 | 0.001 | |
| do3d | 0.520 | 0.019 | 0.577 | |
| genes1d | 0.106 | 0.028 | 0.231 | |
| getcol | 0.040 | 0.000 | 0.064 | |
| graph1D | 0.106 | 0.012 | 0.190 | |
| heatplot | 3.098 | 0.482 | 5.082 | |
| html3D | 0.274 | 0.000 | 0.288 | |
| isDataFrame | 0.023 | 0.003 | 0.027 | |
| khan | 0.008 | 0.000 | 0.008 | |
| ord | 0.238 | 0.004 | 0.242 | |
| overview | 0.605 | 0.004 | 0.609 | |
| plotarrays | 0.304 | 0.008 | 0.311 | |
| plotgenes | 0.145 | 0.000 | 0.146 | |
| prettyDend | 0.727 | 0.000 | 0.727 | |
| randomiser | 0.002 | 0.000 | 0.003 | |
| s.var | 0.291 | 0.000 | 0.291 | |
| sumstats | 0.276 | 0.000 | 0.276 | |
| suppl | 0.504 | 0.012 | 0.515 | |
| topgenes | 0.096 | 0.000 | 0.095 | |