Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:14 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the mirTarRnaSeq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1211/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mirTarRnaSeq 1.7.0 (landing page) Mercedeh Movassagh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | ERROR | |||||||||
Package: mirTarRnaSeq |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz |
StartedAt: 2023-02-07 08:28:29 -0000 (Tue, 07 Feb 2023) |
EndedAt: 2023-02-07 08:33:28 -0000 (Tue, 07 Feb 2023) |
EllapsedTime: 298.7 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: mirTarRnaSeq.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mirTarRnaSeq’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mirTarRnaSeq’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘ggplot2’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: ... --- re-building ‘mirTarRnaSeq.Rmd’ using rmarkdown Killed * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’ for details.
mirTarRnaSeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mirTarRnaSeq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘mirTarRnaSeq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirTarRnaSeq)
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
name | user | system | elapsed | |
combiner | 0.005 | 0.004 | 0.009 | |
corMirnaRna | 0.121 | 0.010 | 0.144 | |
corMirnaRnaMiranda | 0.258 | 0.016 | 0.283 | |
downloadMirandaFile | 0 | 0 | 0 | |
drawCorPlot | 0 | 0 | 0 | |
drawInterPlots | 0.030 | 0.000 | 0.046 | |
fdrSig | 0.752 | 0.000 | 0.791 | |
finInterResult | 0.001 | 0.000 | 0.001 | |
geneVari | 0.001 | 0.000 | 0.000 | |
getInputSpecies | 0.418 | 0.008 | 0.431 | |
glm_gaussian | 0 | 0 | 0 | |
glm_multi | 0 | 0 | 0 | |
glm_nb | 0 | 0 | 0 | |
glm_poisson | 0 | 0 | 0 | |
glm_zeroinfl | 0.001 | 0.000 | 0.001 | |
glm_zeroinfl_negbin | 0.000 | 0.000 | 0.001 | |
glm_zeroinfl_poisson | 0.001 | 0.000 | 0.000 | |
importMirandaFile | 0 | 0 | 0 | |
makeFormulaRightSide | 0 | 0 | 0 | |
miRanComp | 0.038 | 0.004 | 0.042 | |
miRandaIntersect | 0.016 | 0.008 | 0.023 | |
mirRnaDensityCor | 0.038 | 0.004 | 0.042 | |
mirRnaDensityInter | 0 | 0 | 0 | |
mirRnaHeatmap | 0.997 | 0.004 | 1.026 | |
mirRnaHeatmapDiff | 0.115 | 0.000 | 0.115 | |
mirandaIntersectInter | 0.019 | 0.000 | 0.019 | |
modelAIC | 0.067 | 0.000 | 0.068 | |
modelCoefficients | 0.001 | 0.000 | 0.002 | |
modelData | 0.000 | 0.000 | 0.001 | |
modelModelName | 0 | 0 | 0 | |
modelModelPvalue | 0.001 | 0.000 | 0.001 | |
modelTermPvalues | 0.001 | 0.000 | 0.001 | |
modelsFilter | 0 | 0 | 0 | |
one2OneRnaMiRNA | 0 | 0 | 0 | |
plotFit | 0.022 | 0.000 | 0.022 | |
plotResiduals | 0.009 | 0.000 | 0.008 | |
plotTerms | 0.003 | 0.000 | 0.004 | |
runAllMirnaModels | 0.702 | 0.004 | 0.707 | |
runModels | 0.698 | 0.004 | 0.703 | |
sampCorRnaMirna | 1.191 | 0.043 | 1.320 | |
threshSig | 0.000 | 0.000 | 0.001 | |
threshSigInter | 0.000 | 0.003 | 0.002 | |
twoTimePoint | 0 | 0 | 0 | |
twoTimePointSamp | 0.000 | 0.000 | 0.001 | |
tzTrans | 0.005 | 0.003 | 0.008 | |