| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-08 01:15:16 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the muscat package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/muscat.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1299/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| muscat 1.13.0 (landing page) Helena L. Crowell
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: muscat |
| Version: 1.13.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data muscat |
| StartedAt: 2023-02-06 11:13:22 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 11:19:37 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 374.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data muscat ### ############################################################################## ############################################################################## * checking for file ‘muscat/DESCRIPTION’ ... OK * preparing ‘muscat’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘analysis.Rmd’ using rmarkdown The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/dr-ids-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/dr-ids-2.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/pb-mds-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/unnamed-chunk-5-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/upset-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/unnamed-chunk-12-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/violins-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/pb-hm-1-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/pb-hm-2-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/analysis_files/figure-html/pb-hm-3-1.png" but not available. --- finished re-building ‘analysis.Rmd’ --- re-building ‘simulation.Rmd’ using rmarkdown The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/simulation_files/figure-html/densities-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/simulation_files/figure-html/rel-lfc-1.png" but not available. The magick package is required to crop "/tmp/Rtmpat67v0/Rbuild1483bc63f595f1/muscat/vignettes/simulation_files/figure-html/p-type-1.png" but not available. Quitting from lines 309-315 (simulation.Rmd) Error: processing vignette 'simulation.Rmd' failed with diagnostics: arguments imply differing number of rows: 1000, 0 --- failed re-building ‘simulation.Rmd’ SUMMARY: processing the following file failed: ‘simulation.Rmd’ Error: Vignette re-building failed. Execution halted