| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:19 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the pareg package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1425/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pareg 1.3.0 (landing page) Kim Philipp Jablonski
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: pareg |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg |
| StartedAt: 2023-02-06 11:54:59 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 11:57:08 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 129.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
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* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/Rtmpkqlk4y/Rbuild152a744b3c1ea4/pareg/vignettes/pareg_files/figure-html/unnamed-chunk-4-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpkqlk4y/Rbuild152a744b3c1ea4/pareg/vignettes/pareg_files/figure-html/unnamed-chunk-5-1.png" but not available.
/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:98: UserWarning: unable to load libtensorflow_io_plugins.so: unable to open file: libtensorflow_io_plugins.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so']
caused by: ["[Errno 2] The file to load file system plugin from does not exist.: '/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so'"]
warnings.warn(f"unable to load libtensorflow_io_plugins.so: {e}")
/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:104: UserWarning: file system plugins are not loaded: unable to open file: libtensorflow_io.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so']
caused by: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so: cannot open shared object file: No such file or directory']
warnings.warn(f"file system plugins are not loaded: {e}")
Quitting from lines 145-150 (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
Python module tensorflow_probability was not found.
Detected Python configuration:
--- failed re-building ‘pareg.Rmd’
--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/Rtmpkqlk4y/Rbuild152a744b3c1ea4/pareg/vignettes/pathway_similarities_files/figure-html/unnamed-chunk-2-1.png" but not available.
The magick package is required to crop "/tmp/Rtmpkqlk4y/Rbuild152a744b3c1ea4/pareg/vignettes/pathway_similarities_files/figure-html/unnamed-chunk-3-1.png" but not available.
--- finished re-building ‘pathway_similarities.Rmd’
SUMMARY: processing the following file failed:
‘pareg.Rmd’
Error: Vignette re-building failed.
Execution halted