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This page was generated on 2023-02-08 01:15:20 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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BUILD results for pkgDepTools on kunpeng1


To the developers/maintainers of the pkgDepTools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pkgDepTools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 1479/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pkgDepTools 1.65.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/pkgDepTools
git_branch: master
git_last_commit: fea3b6d
git_last_commit_date: 2023-01-06 18:06:59 -0000 (Fri, 06 Jan 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: pkgDepTools
Version: 1.65.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pkgDepTools
StartedAt: 2023-02-06 12:14:04 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 12:54:02 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 2397.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pkgDepTools
###
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* checking for file ‘pkgDepTools/DESCRIPTION’ ... OK
* preparing ‘pkgDepTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pkgDepTools.Rnw’ using Sweave
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: RBGL
Warning: Package 'pkgDepTools' is deprecated and will be removed from
  Bioconductor version 3.18
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: grid
Warning in .local(from, to, graph) :
  edges replaced: ‘IFAA|mathjaxr’, ‘NA|doRNG’, ‘NA|foreach’, ‘NA|Matrix’, ‘NA|HDCI’, ‘NA|parallel’, ‘NA|doParallel’, ‘NA|parallelly’, ‘NA|glmnet’, ‘NA|stats’, ‘NA|utils’, ‘NA|SummarizedExperiment’, ‘NA|stringr’, ‘NA|S4Vectors’, ‘NA|DescTools’, ‘NA|MatrixExtra’, ‘NA|methods’
Warning in .local(from, to, graph) :
  edges replaced: ‘NA|ggplot2’, ‘NA|ggside’, ‘NA|stats’, ‘NA|stringr’
Killed