Back to Build/check report for BioC 3.17
ABCDEFGHIJKLMNOP[Q]RSTUVWXYZ

This page was generated on 2023-02-08 01:15:22 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for quantiseqr on kunpeng1


To the developers/maintainers of the quantiseqr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/quantiseqr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1561/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
quantiseqr 1.7.0  (landing page)
Federico Marini
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/quantiseqr
git_branch: master
git_last_commit: 41e008b
git_last_commit_date: 2022-11-01 15:24:47 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: quantiseqr
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data quantiseqr
StartedAt: 2023-02-06 12:44:51 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 12:51:38 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 406.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data quantiseqr
###
##############################################################################
##############################################################################


* checking for file ‘quantiseqr/DESCRIPTION’ ... OK
* preparing ‘quantiseqr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_quantiseqr.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107572/suppl//GSE107572_tpm_PBMC_RNAseq.txt.gz?tool=geoquery'
Content type 'application/x-gzip' length 753545 bytes (735 KB)
=============================================
downloaded 672 KB

Quitting from lines 173-187 (using_quantiseqr.Rmd) 
Error: processing vignette 'using_quantiseqr.Rmd' failed with diagnostics:
Failed to download /tmp/Rtmpj1mHda/GSE107572/GSE107572_tpm_PBMC_RNAseq.txt.gz!
--- failed re-building ‘using_quantiseqr.Rmd’

SUMMARY: processing the following file failed:
  ‘using_quantiseqr.Rmd’

Error: Vignette re-building failed.
Execution halted