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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:restfulSE.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings restfulSE_1.21.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/restfulSE.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘restfulSE/DESCRIPTION’ ... OK
* this is package ‘restfulSE’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘restfulSE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BQ3_ArraySeed: no visible global function definition for ‘is’
BQ3_ArraySeed: no visible global function definition for ‘new’
BQ3_Source: no visible global function definition for ‘slot’
BQ3_Source: no visible binding for global variable
  ‘SampleTypeLetterCode’
BQ3_Source: no visible global function definition for ‘new’
BQ3m2: no visible binding for global variable ‘SampleTypeLetterCode’
BQM_ArraySeed: no visible global function definition for ‘is’
BQM_ArraySeed: no visible global function definition for ‘new’
BQM_Source: no visible global function definition for ‘new’
TCGA_tablerefs: no visible global function definition for ‘new’
newDA: no visible global function definition for ‘new’
replaceSlots: no visible global function definition for ‘validObject’
seByTumor: no visible global function definition for ‘new’
unsafe_replaceSlots: no visible global function definition for ‘slot’
unsafe_replaceSlots: no visible global function definition for ‘slot<-’
coerce,BQ3_Array-BQ3_Matrix: no visible global function definition for
  ‘new’
coerce,BQM_Array-BQM_Matrix: no visible global function definition for
  ‘new’
Undefined global functions or variables:
  SampleTypeLetterCode is new slot slot<- validObject
Consider adding
  importFrom("methods", "is", "new", "slot", "slot<-", "validObject")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL restfulSE
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘restfulSE’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (restfulSE)