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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL rsbml
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘rsbml’ ...
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML... yes
configure: === Begin local SOSLib build ===
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... config/config.guess: unable to guess system type

This script, last modified 2008-01-23, has failed to recognize
the operating system you are using. It is advised that you
download the most up to date version of the config scripts from

  http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD
and
  http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD

If the version you run (config/config.guess) is already up to date, please
send the following data and any information you think might be
pertinent to <config-patches@gnu.org> in order to provide the needed
information to handle your system.

config.guess timestamp = 2008-01-23

uname -m = aarch64
uname -r = 5.15.0-58-generic
uname -s = Linux
uname -v = #64-Ubuntu SMP Thu Jan 5 12:06:43 UTC 2023

/usr/bin/uname -p = aarch64
/bin/uname -X     = 

hostinfo               = 
/bin/universe          = 
/usr/bin/arch -k       = 
/bin/arch              = aarch64
/usr/bin/oslevel       = 
/usr/convex/getsysinfo = 

UNAME_MACHINE = aarch64
UNAME_RELEASE = 5.15.0-58-generic
UNAME_SYSTEM  = Linux
UNAME_VERSION = #64-Ubuntu SMP Thu Jan 5 12:06:43 UTC 2023
configure: error: cannot guess build type; you must specify one
configure: === End local SOSLib build ===
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c StringMap.c -o StringMap.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c check.c -o check.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c doc.c -o doc.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c dom.c -o dom.o
dom.c: In function ‘rsbml_build_dom_line_segment’:
dom.c:687:12: warning: comparison between ‘SBMLTypeCode_t’ and ‘enum <anonymous>’ [-Wenum-compare]
  687 |   if (type == SBML_LAYOUT_CUBICBEZIER) {
      |            ^~
dom.c:693:19: warning: comparison between ‘SBMLTypeCode_t’ and ‘enum <anonymous>’ [-Wenum-compare]
  693 |   } else if (type == SBML_LAYOUT_LINESEGMENT)
      |                   ^~
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c graph.c -o graph.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c io.c -o io.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall  -c layoutWrappers.cpp -o layoutWrappers.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c mathml.c -o mathml.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/include/libxml2    -I/usr/local/include    -fPIC  -g -O2  -Wall -c simulate.c -o simulate.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -lsbml -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-rsbml/00new/rsbml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rsbml)