| Back to Build/check report for BioC 3.17 | 
  | 
This page was generated on 2023-02-08 01:15:34 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the unifiedWMWqPCR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/unifiedWMWqPCR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 2105/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| unifiedWMWqPCR 1.35.0  (landing page) Joris Meys 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: unifiedWMWqPCR | 
| Version: 1.35.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings unifiedWMWqPCR_1.35.0.tar.gz | 
| StartedAt: 2023-02-07 18:33:11 -0000 (Tue, 07 Feb 2023) | 
| EndedAt: 2023-02-07 18:34:25 -0000 (Tue, 07 Feb 2023) | 
| EllapsedTime: 73.4 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: unifiedWMWqPCR.Rcheck | 
| Warnings: 1 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings unifiedWMWqPCR_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/unifiedWMWqPCR.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘unifiedWMWqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘unifiedWMWqPCR’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘unifiedWMWqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'getEstimate':
  ‘...’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘unifiedWMWqPCR.Rnw’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/unifiedWMWqPCR.Rcheck/00check.log’
for details.
unifiedWMWqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL unifiedWMWqPCR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘unifiedWMWqPCR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘order’ from package ‘base’ in package ‘unifiedWMWqPCR’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unifiedWMWqPCR)
unifiedWMWqPCR.Rcheck/unifiedWMWqPCR-Ex.timings
| name | user | system | elapsed | |
| NBdata | 0.063 | 0.004 | 0.075 | |
| as.matrix.uwmwEstimate | 0.463 | 0.020 | 0.497 | |
| as.matrix.uwmwRes | 0.468 | 0.008 | 0.476 | |
| forestplot-methods | 0.677 | 0.008 | 0.688 | |
| getEstimate-methods | 0.474 | 0.008 | 0.485 | |
| plot | 0.523 | 0.000 | 0.523 | |
| sort_uwmwRes | 0.463 | 0.000 | 0.464 | |
| uWMW-methods | 0.959 | 0.000 | 0.960 | |
| uwmw_Accessors | 0.477 | 0.000 | 0.478 | |
| uwmw_Extract | 0.508 | 0.000 | 0.509 | |
| volcanopar | 0 | 0 | 0 | |
| volcanoplot-methods | 0.459 | 0.004 | 0.463 | |