| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:35 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the wppi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2147/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| wppi 1.7.0 (landing page) Ana Galhoz
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: wppi |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL wppi |
| StartedAt: 2023-02-06 03:05:54 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 03:06:06 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 12.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL wppi ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘wppi’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading [2023-02-06 03:05:57] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:05:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:57] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Contains 1 files. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:05:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:57] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-02-06 03:05:57] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-02-06 03:05:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:57] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-02-06 03:05:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:57] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-02-06 03:05:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:57] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-02-06 03:05:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:57] [TRACE] [OmnipathR] Cache locked: FALSE Note: wrong number of arguments to '/' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2023-02-06 03:06:01] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:06:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:01] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Contains 1 files. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:06:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:01] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-02-06 03:06:01] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-02-06 03:06:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:01] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-02-06 03:06:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:02] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-02-06 03:06:02] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:02] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-02-06 03:06:02] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:02] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2023-02-06 03:06:05] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:06:05] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:05] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Contains 1 files. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:06:05] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:05] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-02-06 03:06:05] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-02-06 03:06:05] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:05] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-02-06 03:06:05] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:05] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-02-06 03:06:05] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:05] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-02-06 03:06:05] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:06:05] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (wppi)