| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-23 01:34:04 -0000 (Thu, 23 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4245 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 914/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz |
| StartedAt: 2023-02-22 06:37:21 -0000 (Wed, 22 Feb 2023) |
| EndedAt: 2023-02-22 06:54:27 -0000 (Wed, 22 Feb 2023) |
| EllapsedTime: 1026.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 38.651 0.600 39.254
corr_plot 38.229 0.432 38.664
FSmethod 37.752 0.440 38.193
pred_ensembel 18.779 0.537 17.000
getFASTA 1.018 0.024 10.678
enrichfindP 0.444 0.033 16.203
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 101.571740
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.834001
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.981251
iter 10 value 88.386635
iter 20 value 87.811543
final value 87.811469
converged
Fitting Repeat 4
# weights: 103
initial value 99.588196
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.735100
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.192196
iter 10 value 92.920683
iter 20 value 92.486458
iter 30 value 92.484823
iter 40 value 92.447719
iter 50 value 92.202202
iter 60 value 92.200993
iter 60 value 92.200992
iter 60 value 92.200992
final value 92.200992
converged
Fitting Repeat 2
# weights: 305
initial value 96.222479
final value 94.275362
converged
Fitting Repeat 3
# weights: 305
initial value 103.743065
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 100.512394
final value 94.046703
converged
Fitting Repeat 5
# weights: 305
initial value 98.991444
iter 10 value 88.994107
iter 20 value 87.076633
iter 30 value 86.949836
iter 40 value 86.947770
final value 86.947734
converged
Fitting Repeat 1
# weights: 507
initial value 108.974470
iter 10 value 93.854267
final value 93.826305
converged
Fitting Repeat 2
# weights: 507
initial value 100.209656
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 112.384236
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 108.518702
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 100.055230
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 100.563055
iter 10 value 94.297288
iter 20 value 88.868698
iter 30 value 87.797068
iter 40 value 87.757847
iter 50 value 87.419871
iter 60 value 87.212978
iter 70 value 87.138717
iter 80 value 87.125725
iter 90 value 86.242742
iter 100 value 85.718791
final value 85.718791
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.213863
iter 10 value 94.461974
iter 20 value 93.938016
iter 30 value 92.296694
iter 40 value 91.740624
iter 50 value 88.401166
iter 60 value 87.311303
iter 70 value 86.625616
iter 80 value 86.538606
iter 90 value 86.489591
iter 100 value 86.469682
final value 86.469682
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.479865
iter 10 value 94.544987
iter 20 value 93.679808
iter 30 value 88.800364
iter 40 value 87.853915
iter 50 value 87.373054
iter 60 value 87.221089
iter 70 value 87.198680
final value 87.198010
converged
Fitting Repeat 4
# weights: 103
initial value 96.260124
iter 10 value 92.949345
iter 20 value 89.375204
iter 30 value 87.282011
iter 40 value 86.773499
iter 50 value 86.304893
iter 60 value 86.216654
iter 70 value 86.216323
final value 86.216321
converged
Fitting Repeat 5
# weights: 103
initial value 105.392956
iter 10 value 94.493088
iter 20 value 94.168422
iter 30 value 88.813479
iter 40 value 87.164838
iter 50 value 86.590554
final value 86.589845
converged
Fitting Repeat 1
# weights: 305
initial value 102.769695
iter 10 value 94.437410
iter 20 value 93.710065
iter 30 value 88.724988
iter 40 value 88.063998
iter 50 value 87.829467
iter 60 value 87.293216
iter 70 value 85.714890
iter 80 value 85.279405
iter 90 value 85.064952
iter 100 value 84.756903
final value 84.756903
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.861411
iter 10 value 94.160966
iter 20 value 88.444547
iter 30 value 88.129691
iter 40 value 87.315615
iter 50 value 86.291782
iter 60 value 86.139820
iter 70 value 85.790633
iter 80 value 85.045717
iter 90 value 84.154980
iter 100 value 84.061121
final value 84.061121
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.745263
iter 10 value 94.032435
iter 20 value 89.042782
iter 30 value 86.921239
iter 40 value 85.023991
iter 50 value 84.716805
iter 60 value 83.475549
iter 70 value 83.084795
iter 80 value 82.590008
iter 90 value 82.335427
iter 100 value 82.217530
final value 82.217530
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.190007
iter 10 value 94.398446
iter 20 value 88.883015
iter 30 value 88.387785
iter 40 value 87.187583
iter 50 value 85.094610
iter 60 value 84.125477
iter 70 value 83.640821
iter 80 value 83.556218
iter 90 value 83.509144
iter 100 value 83.482657
final value 83.482657
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.193506
iter 10 value 94.128830
iter 20 value 89.656715
iter 30 value 86.328998
iter 40 value 84.316583
iter 50 value 82.857158
iter 60 value 82.385415
iter 70 value 82.325540
iter 80 value 82.144945
iter 90 value 82.110187
iter 100 value 82.103273
final value 82.103273
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.377301
iter 10 value 94.468506
iter 20 value 91.808302
iter 30 value 86.624313
iter 40 value 84.226102
iter 50 value 83.457544
iter 60 value 83.394659
iter 70 value 83.293766
iter 80 value 83.199610
iter 90 value 83.170483
iter 100 value 83.107260
final value 83.107260
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 152.160425
iter 10 value 94.838579
iter 20 value 92.426052
iter 30 value 88.312001
iter 40 value 87.069343
iter 50 value 85.491652
iter 60 value 83.358767
iter 70 value 83.103039
iter 80 value 82.836945
iter 90 value 82.562857
iter 100 value 82.365174
final value 82.365174
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.710684
iter 10 value 94.179499
iter 20 value 90.738410
iter 30 value 88.820050
iter 40 value 86.449049
iter 50 value 85.025261
iter 60 value 84.393115
iter 70 value 84.227553
iter 80 value 84.174098
iter 90 value 84.032491
iter 100 value 83.870192
final value 83.870192
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 124.153615
iter 10 value 94.931585
iter 20 value 91.989587
iter 30 value 88.615513
iter 40 value 87.799942
iter 50 value 87.420124
iter 60 value 86.666994
iter 70 value 85.154779
iter 80 value 84.265863
iter 90 value 82.948417
iter 100 value 82.363949
final value 82.363949
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.004230
iter 10 value 94.450766
iter 20 value 93.612051
iter 30 value 87.258212
iter 40 value 86.286268
iter 50 value 84.826230
iter 60 value 83.492722
iter 70 value 83.273529
iter 80 value 83.050437
iter 90 value 82.753601
iter 100 value 82.561529
final value 82.561529
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.176658
final value 94.485603
converged
Fitting Repeat 2
# weights: 103
initial value 101.852945
final value 94.485922
converged
Fitting Repeat 3
# weights: 103
initial value 100.499675
final value 94.485760
converged
Fitting Repeat 4
# weights: 103
initial value 103.174125
final value 94.485794
converged
Fitting Repeat 5
# weights: 103
initial value 95.735853
iter 10 value 94.486051
final value 94.484216
converged
Fitting Repeat 1
# weights: 305
initial value 105.207980
iter 10 value 94.316924
iter 20 value 94.312389
iter 30 value 86.721895
iter 40 value 86.039805
iter 50 value 86.037895
iter 60 value 86.004595
iter 70 value 85.992422
iter 80 value 85.989481
iter 90 value 85.970994
iter 100 value 85.909706
final value 85.909706
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.788723
iter 10 value 89.546593
iter 20 value 89.500308
iter 30 value 89.498013
iter 40 value 89.287849
iter 50 value 88.742033
iter 60 value 87.026598
iter 70 value 86.965663
final value 86.965347
converged
Fitting Repeat 3
# weights: 305
initial value 101.271569
iter 10 value 94.280276
iter 20 value 94.275851
final value 94.275758
converged
Fitting Repeat 4
# weights: 305
initial value 103.308403
iter 10 value 94.280406
iter 20 value 94.276616
iter 30 value 94.273711
iter 40 value 87.322178
iter 50 value 87.321050
iter 60 value 87.320738
iter 70 value 87.184960
final value 87.037640
converged
Fitting Repeat 5
# weights: 305
initial value 105.805234
iter 10 value 94.489372
iter 20 value 94.368497
iter 30 value 94.105538
final value 94.105350
converged
Fitting Repeat 1
# weights: 507
initial value 105.850226
iter 10 value 94.492519
iter 20 value 94.438411
iter 30 value 92.951323
iter 40 value 91.465200
iter 50 value 91.445620
iter 60 value 91.262111
iter 70 value 91.172183
iter 80 value 91.147489
final value 91.146955
converged
Fitting Repeat 2
# weights: 507
initial value 113.414078
iter 10 value 94.283717
iter 20 value 94.282710
iter 30 value 94.281610
iter 40 value 94.047664
iter 50 value 88.428403
iter 60 value 88.338194
iter 70 value 88.092456
final value 88.092243
converged
Fitting Repeat 3
# weights: 507
initial value 128.896007
iter 10 value 94.492219
iter 20 value 87.985429
iter 30 value 87.540673
iter 40 value 87.424590
iter 50 value 87.074863
iter 60 value 87.072424
final value 87.070591
converged
Fitting Repeat 4
# weights: 507
initial value 113.232585
iter 10 value 94.491610
iter 20 value 94.484123
iter 30 value 90.587109
iter 40 value 89.352528
iter 50 value 89.031813
iter 60 value 88.975649
iter 70 value 88.967700
iter 80 value 88.966987
iter 90 value 88.959087
iter 100 value 87.706043
final value 87.706043
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.563206
iter 10 value 94.283116
iter 20 value 94.275092
iter 30 value 86.821682
iter 40 value 85.811811
iter 50 value 85.529278
iter 60 value 85.528278
final value 85.528265
converged
Fitting Repeat 1
# weights: 103
initial value 95.891493
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 110.345512
iter 10 value 94.469326
iter 20 value 94.443244
final value 94.443243
converged
Fitting Repeat 3
# weights: 103
initial value 107.592542
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.591661
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.626537
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.993262
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 117.819425
final value 94.443243
converged
Fitting Repeat 3
# weights: 305
initial value 100.734842
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.886474
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.712819
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 104.425553
final value 94.427726
converged
Fitting Repeat 2
# weights: 507
initial value 107.265627
iter 10 value 92.237088
iter 20 value 86.017107
final value 86.017102
converged
Fitting Repeat 3
# weights: 507
initial value 99.284809
iter 10 value 91.756776
iter 20 value 89.801983
final value 89.800030
converged
Fitting Repeat 4
# weights: 507
initial value 125.040175
final value 94.443244
converged
Fitting Repeat 5
# weights: 507
initial value 130.221406
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 102.221086
iter 10 value 94.482984
iter 20 value 90.731996
iter 30 value 82.982005
iter 40 value 82.818195
iter 50 value 82.576359
iter 60 value 82.457253
iter 70 value 82.426151
final value 82.420440
converged
Fitting Repeat 2
# weights: 103
initial value 108.935748
iter 10 value 94.487803
iter 20 value 90.235558
iter 30 value 84.037768
iter 40 value 82.926045
iter 50 value 82.618226
iter 60 value 82.491032
iter 70 value 82.413391
final value 82.411529
converged
Fitting Repeat 3
# weights: 103
initial value 101.917571
iter 10 value 92.953090
iter 20 value 83.510609
iter 30 value 82.574139
iter 40 value 82.433468
iter 50 value 82.411569
final value 82.411529
converged
Fitting Repeat 4
# weights: 103
initial value 101.017245
iter 10 value 93.780243
iter 20 value 84.365100
iter 30 value 82.351646
iter 40 value 82.092894
final value 82.088146
converged
Fitting Repeat 5
# weights: 103
initial value 96.299540
iter 10 value 93.837600
iter 20 value 91.342898
iter 30 value 89.821669
iter 40 value 88.735847
iter 50 value 87.184062
iter 60 value 84.333723
iter 70 value 83.834238
iter 80 value 82.476148
iter 90 value 82.421495
final value 82.421473
converged
Fitting Repeat 1
# weights: 305
initial value 113.410545
iter 10 value 94.419560
iter 20 value 84.224582
iter 30 value 83.686159
iter 40 value 81.987107
iter 50 value 80.918603
iter 60 value 80.653984
iter 70 value 80.605646
iter 80 value 80.412431
iter 90 value 80.172913
iter 100 value 80.032486
final value 80.032486
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.301728
iter 10 value 93.250062
iter 20 value 92.001875
iter 30 value 91.081438
iter 40 value 88.151203
iter 50 value 83.003398
iter 60 value 81.400082
iter 70 value 79.291195
iter 80 value 78.560411
iter 90 value 78.319409
iter 100 value 78.192855
final value 78.192855
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.182159
iter 10 value 94.791704
iter 20 value 89.562638
iter 30 value 84.789736
iter 40 value 83.288642
iter 50 value 82.848219
iter 60 value 79.846494
iter 70 value 79.309744
iter 80 value 79.142769
iter 90 value 78.975514
iter 100 value 78.753897
final value 78.753897
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 120.050715
iter 10 value 93.104062
iter 20 value 86.270887
iter 30 value 83.483649
iter 40 value 82.040737
iter 50 value 81.789110
iter 60 value 81.660438
iter 70 value 81.439703
iter 80 value 79.798485
iter 90 value 78.808411
iter 100 value 78.649043
final value 78.649043
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.853920
iter 10 value 94.340269
iter 20 value 87.047253
iter 30 value 82.003946
iter 40 value 80.181382
iter 50 value 79.414788
iter 60 value 79.289025
iter 70 value 79.261567
iter 80 value 78.686680
iter 90 value 78.623465
iter 100 value 78.407081
final value 78.407081
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.970095
iter 10 value 94.520834
iter 20 value 91.093636
iter 30 value 86.137444
iter 40 value 83.859056
iter 50 value 82.474249
iter 60 value 81.881090
iter 70 value 81.707442
iter 80 value 81.402927
iter 90 value 81.222900
iter 100 value 79.740619
final value 79.740619
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.403822
iter 10 value 94.283633
iter 20 value 84.943189
iter 30 value 83.091585
iter 40 value 82.385244
iter 50 value 80.831624
iter 60 value 80.108186
iter 70 value 79.703384
iter 80 value 79.601920
iter 90 value 79.229279
iter 100 value 78.808634
final value 78.808634
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.343326
iter 10 value 94.457720
iter 20 value 94.244819
iter 30 value 88.737735
iter 40 value 82.970681
iter 50 value 79.790397
iter 60 value 78.512479
iter 70 value 78.139074
iter 80 value 78.100569
iter 90 value 78.070294
iter 100 value 78.039620
final value 78.039620
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 139.550161
iter 10 value 95.986829
iter 20 value 86.671202
iter 30 value 81.423041
iter 40 value 80.072543
iter 50 value 79.066399
iter 60 value 78.642254
iter 70 value 78.039997
iter 80 value 77.759165
iter 90 value 77.685279
iter 100 value 77.562814
final value 77.562814
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.455973
iter 10 value 94.951812
iter 20 value 94.452244
iter 30 value 92.273865
iter 40 value 90.008463
iter 50 value 89.562384
iter 60 value 89.107161
iter 70 value 86.000003
iter 80 value 82.120134
iter 90 value 80.947852
iter 100 value 80.624808
final value 80.624808
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.120662
final value 94.485961
converged
Fitting Repeat 2
# weights: 103
initial value 95.056312
final value 94.485676
converged
Fitting Repeat 3
# weights: 103
initial value 99.292968
final value 94.485945
converged
Fitting Repeat 4
# weights: 103
initial value 107.255676
final value 94.485826
converged
Fitting Repeat 5
# weights: 103
initial value 90.209374
iter 10 value 84.006385
iter 20 value 81.132248
iter 30 value 81.126759
iter 40 value 81.125600
iter 50 value 81.124052
iter 60 value 80.956737
iter 70 value 80.791469
iter 70 value 80.791469
iter 70 value 80.791469
final value 80.791469
converged
Fitting Repeat 1
# weights: 305
initial value 98.364911
iter 10 value 94.487647
iter 20 value 94.476901
iter 30 value 88.865306
final value 83.265483
converged
Fitting Repeat 2
# weights: 305
initial value 95.237250
iter 10 value 94.448089
iter 20 value 94.444016
iter 30 value 82.079935
iter 40 value 80.041257
iter 50 value 79.980650
iter 60 value 79.957886
iter 70 value 79.224874
iter 80 value 79.049980
iter 90 value 78.101405
iter 100 value 77.576724
final value 77.576724
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.198648
iter 10 value 94.448304
iter 20 value 94.267257
iter 30 value 92.743711
iter 40 value 84.066317
iter 50 value 82.477836
iter 60 value 82.301521
iter 70 value 82.266687
iter 80 value 82.175194
iter 90 value 78.130124
iter 100 value 77.912955
final value 77.912955
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.470978
iter 10 value 94.448087
iter 20 value 94.424962
iter 30 value 85.422717
iter 40 value 81.135346
iter 50 value 81.126283
final value 81.126136
converged
Fitting Repeat 5
# weights: 305
initial value 97.324716
iter 10 value 94.447863
iter 20 value 94.439816
iter 30 value 94.254754
final value 94.254731
converged
Fitting Repeat 1
# weights: 507
initial value 101.216008
iter 10 value 94.452006
iter 20 value 94.428439
iter 30 value 90.246381
iter 40 value 90.221908
final value 90.220821
converged
Fitting Repeat 2
# weights: 507
initial value 110.295265
iter 10 value 94.469455
iter 20 value 94.463922
iter 30 value 93.691265
iter 40 value 93.653647
iter 50 value 93.291035
iter 60 value 92.929243
iter 70 value 92.784121
iter 80 value 92.528820
iter 90 value 89.333674
iter 100 value 83.784626
final value 83.784626
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.138426
iter 10 value 86.643233
iter 20 value 86.632934
iter 30 value 86.626091
iter 30 value 86.626090
iter 40 value 86.625510
iter 50 value 83.119815
iter 60 value 81.196686
iter 70 value 80.981899
iter 80 value 80.981644
iter 90 value 80.948418
iter 100 value 80.940061
final value 80.940061
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 96.736313
final value 94.492839
converged
Fitting Repeat 5
# weights: 507
initial value 103.441489
iter 10 value 94.492672
iter 20 value 94.384393
iter 30 value 86.253885
iter 40 value 85.714195
iter 50 value 84.119928
iter 60 value 82.648423
iter 70 value 82.370752
iter 80 value 82.365264
iter 90 value 82.354714
iter 100 value 81.732827
final value 81.732827
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.484601
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 107.882457
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.443709
iter 10 value 91.506173
iter 10 value 91.506173
iter 10 value 91.506173
final value 91.506173
converged
Fitting Repeat 4
# weights: 103
initial value 95.003324
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 102.520085
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 95.437672
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 95.850833
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 103.077307
iter 10 value 91.770094
iter 20 value 81.812759
final value 81.772829
converged
Fitting Repeat 4
# weights: 305
initial value 108.049814
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 111.389471
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 115.544067
iter 10 value 93.289015
iter 20 value 93.274358
iter 30 value 93.180233
iter 30 value 93.180233
iter 30 value 93.180233
final value 93.180233
converged
Fitting Repeat 2
# weights: 507
initial value 97.730067
iter 10 value 93.569540
iter 20 value 93.511304
final value 93.511111
converged
Fitting Repeat 3
# weights: 507
initial value 101.745102
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 97.648121
final value 93.915746
converged
Fitting Repeat 5
# weights: 507
initial value 97.917010
iter 10 value 94.010012
iter 20 value 85.937218
iter 30 value 84.379093
iter 40 value 84.084267
iter 50 value 84.059806
iter 60 value 84.059248
iter 60 value 84.059248
final value 84.059248
converged
Fitting Repeat 1
# weights: 103
initial value 104.623351
iter 10 value 92.639690
iter 20 value 86.439093
iter 30 value 83.807248
iter 40 value 83.135319
iter 50 value 82.163815
iter 60 value 81.100160
iter 70 value 81.072152
final value 81.072110
converged
Fitting Repeat 2
# weights: 103
initial value 98.717131
iter 10 value 94.058235
iter 20 value 89.382791
iter 30 value 83.806027
iter 40 value 82.172474
iter 50 value 81.648829
iter 60 value 81.198398
iter 70 value 80.980736
final value 80.965992
converged
Fitting Repeat 3
# weights: 103
initial value 105.234223
iter 10 value 94.085070
iter 20 value 88.485632
iter 30 value 83.385510
iter 40 value 82.967709
iter 50 value 82.758020
iter 60 value 82.190085
iter 70 value 81.702099
iter 80 value 81.464733
iter 90 value 81.200658
iter 100 value 81.081072
final value 81.081072
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.314368
iter 10 value 94.057268
iter 20 value 92.625414
iter 30 value 85.981865
iter 40 value 85.199702
iter 50 value 82.394067
iter 60 value 81.600335
iter 70 value 80.987813
iter 80 value 80.586065
iter 90 value 80.580598
final value 80.577838
converged
Fitting Repeat 5
# weights: 103
initial value 98.922777
iter 10 value 94.056693
iter 20 value 92.271113
iter 30 value 82.761061
iter 40 value 82.336280
iter 50 value 81.730713
iter 60 value 81.277656
iter 70 value 81.100220
iter 80 value 81.076658
final value 81.072110
converged
Fitting Repeat 1
# weights: 305
initial value 102.302275
iter 10 value 93.742861
iter 20 value 83.827823
iter 30 value 82.453205
iter 40 value 81.582217
iter 50 value 81.456572
iter 60 value 81.177261
iter 70 value 80.923992
iter 80 value 80.905258
iter 90 value 80.727815
iter 100 value 79.842240
final value 79.842240
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 118.519601
iter 10 value 94.416647
iter 20 value 93.959457
iter 30 value 87.090215
iter 40 value 86.438539
iter 50 value 80.909346
iter 60 value 78.177208
iter 70 value 78.043420
iter 80 value 77.864638
iter 90 value 77.803889
iter 100 value 77.532739
final value 77.532739
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 119.843966
iter 10 value 93.507272
iter 20 value 86.066695
iter 30 value 85.700989
iter 40 value 85.059473
iter 50 value 82.846764
iter 60 value 79.382558
iter 70 value 78.441977
iter 80 value 78.175687
iter 90 value 78.041022
iter 100 value 77.933717
final value 77.933717
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.706987
iter 10 value 94.050105
iter 20 value 82.205554
iter 30 value 80.190396
iter 40 value 79.352964
iter 50 value 78.323100
iter 60 value 78.225024
iter 70 value 77.722529
iter 80 value 77.560376
iter 90 value 77.490024
iter 100 value 77.398057
final value 77.398057
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.953226
iter 10 value 94.249873
iter 20 value 93.838596
iter 30 value 91.237796
iter 40 value 85.943647
iter 50 value 84.819736
iter 60 value 84.221006
iter 70 value 80.596315
iter 80 value 79.175670
iter 90 value 78.763086
iter 100 value 78.162292
final value 78.162292
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.071434
iter 10 value 94.994947
iter 20 value 89.754114
iter 30 value 85.716564
iter 40 value 82.883740
iter 50 value 80.675146
iter 60 value 79.360214
iter 70 value 78.408786
iter 80 value 77.700697
iter 90 value 77.514553
iter 100 value 77.120435
final value 77.120435
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.482229
iter 10 value 94.078250
iter 20 value 89.004188
iter 30 value 88.256287
iter 40 value 85.212350
iter 50 value 83.208706
iter 60 value 82.171315
iter 70 value 81.252395
iter 80 value 79.254846
iter 90 value 78.087014
iter 100 value 77.685281
final value 77.685281
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.337962
iter 10 value 94.039436
iter 20 value 93.414016
iter 30 value 86.913732
iter 40 value 86.488494
iter 50 value 86.169606
iter 60 value 84.539712
iter 70 value 81.575173
iter 80 value 79.069039
iter 90 value 78.350635
iter 100 value 78.024821
final value 78.024821
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.364242
iter 10 value 100.021634
iter 20 value 87.047548
iter 30 value 85.205330
iter 40 value 83.740781
iter 50 value 83.351035
iter 60 value 82.333956
iter 70 value 80.982431
iter 80 value 80.050748
iter 90 value 79.756935
iter 100 value 79.701858
final value 79.701858
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.386718
iter 10 value 94.133978
iter 20 value 85.143799
iter 30 value 83.948373
iter 40 value 83.020812
iter 50 value 82.649401
iter 60 value 81.961396
iter 70 value 80.957415
iter 80 value 79.989828
iter 90 value 79.294702
iter 100 value 79.198532
final value 79.198532
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.276429
final value 93.917644
converged
Fitting Repeat 2
# weights: 103
initial value 95.324971
final value 94.054427
converged
Fitting Repeat 3
# weights: 103
initial value 97.444071
final value 94.054585
converged
Fitting Repeat 4
# weights: 103
initial value 104.023742
final value 94.054277
converged
Fitting Repeat 5
# weights: 103
initial value 101.708522
final value 94.054642
converged
Fitting Repeat 1
# weights: 305
initial value 98.595808
iter 10 value 94.057576
iter 20 value 94.050568
iter 30 value 93.645035
iter 40 value 93.126954
iter 50 value 81.833392
iter 60 value 81.286934
final value 81.282599
converged
Fitting Repeat 2
# weights: 305
initial value 100.635714
iter 10 value 94.056671
iter 20 value 93.944039
final value 93.944004
converged
Fitting Repeat 3
# weights: 305
initial value 97.962329
iter 10 value 94.057953
iter 20 value 94.052966
iter 30 value 86.693889
iter 40 value 85.288321
iter 50 value 85.180188
iter 60 value 85.171997
final value 85.171961
converged
Fitting Repeat 4
# weights: 305
initial value 109.629166
iter 10 value 94.057632
iter 20 value 94.052944
iter 30 value 92.996628
iter 40 value 83.016011
iter 50 value 82.365835
iter 60 value 82.218515
iter 70 value 81.915396
iter 80 value 81.908433
iter 90 value 81.903600
final value 81.903542
converged
Fitting Repeat 5
# weights: 305
initial value 99.523270
iter 10 value 93.920916
iter 20 value 93.916436
iter 30 value 84.527418
final value 84.526122
converged
Fitting Repeat 1
# weights: 507
initial value 95.136202
iter 10 value 93.612707
iter 20 value 93.605268
iter 30 value 92.009419
iter 40 value 82.545959
iter 50 value 81.914218
iter 60 value 81.856560
iter 70 value 81.830842
iter 80 value 81.828127
iter 90 value 81.771100
iter 100 value 80.534092
final value 80.534092
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 128.710241
iter 10 value 94.061991
iter 20 value 94.001462
iter 30 value 93.487897
iter 40 value 86.552874
iter 50 value 86.179885
iter 60 value 86.179749
iter 70 value 86.171719
iter 80 value 85.816459
iter 90 value 85.487548
final value 85.486103
converged
Fitting Repeat 3
# weights: 507
initial value 109.710398
iter 10 value 87.914564
iter 20 value 82.636764
iter 30 value 82.620201
iter 40 value 81.955751
iter 50 value 81.863275
iter 60 value 81.567421
iter 70 value 81.560294
iter 80 value 81.528128
iter 90 value 80.965563
iter 100 value 80.620809
final value 80.620809
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.421562
iter 10 value 93.296840
iter 20 value 93.290656
iter 30 value 93.290314
final value 93.290281
converged
Fitting Repeat 5
# weights: 507
initial value 105.084588
iter 10 value 93.555745
iter 20 value 93.529125
iter 30 value 92.876123
iter 40 value 85.641239
iter 50 value 85.274365
iter 60 value 85.206079
iter 70 value 85.205124
iter 80 value 84.544800
iter 90 value 84.541998
iter 100 value 83.844038
final value 83.844038
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 108.329105
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.827711
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 108.143284
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.595060
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.221786
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.131927
iter 10 value 94.443183
iter 10 value 94.443182
iter 10 value 94.443182
final value 94.443182
converged
Fitting Repeat 2
# weights: 305
initial value 103.276748
final value 94.467391
converged
Fitting Repeat 3
# weights: 305
initial value 111.838229
final value 94.467391
converged
Fitting Repeat 4
# weights: 305
initial value 105.842063
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.349995
iter 10 value 94.325203
final value 94.275364
converged
Fitting Repeat 1
# weights: 507
initial value 106.747646
final value 94.275362
converged
Fitting Repeat 2
# weights: 507
initial value 100.286316
iter 10 value 94.147546
iter 20 value 94.114681
final value 94.103916
converged
Fitting Repeat 3
# weights: 507
initial value 113.626887
final value 94.461538
converged
Fitting Repeat 4
# weights: 507
initial value 122.014563
iter 10 value 94.467618
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 114.932945
iter 10 value 90.989392
iter 20 value 89.717109
iter 30 value 89.715372
final value 89.715368
converged
Fitting Repeat 1
# weights: 103
initial value 97.424194
iter 10 value 94.204554
iter 20 value 88.718257
iter 30 value 88.394535
iter 40 value 86.696332
iter 50 value 85.440333
iter 60 value 85.172085
iter 70 value 84.836511
iter 80 value 84.731395
iter 90 value 84.721714
final value 84.719501
converged
Fitting Repeat 2
# weights: 103
initial value 109.333838
iter 10 value 94.497933
iter 20 value 94.486486
iter 30 value 91.026927
iter 40 value 89.384285
iter 50 value 89.030622
iter 60 value 87.923136
iter 70 value 87.294592
iter 80 value 87.173656
final value 87.152998
converged
Fitting Repeat 3
# weights: 103
initial value 102.058501
iter 10 value 94.489400
iter 20 value 94.483207
iter 30 value 90.379405
iter 40 value 89.752847
iter 50 value 88.644212
iter 60 value 86.776288
iter 70 value 86.542128
iter 80 value 86.437729
iter 90 value 86.354715
iter 100 value 86.250952
final value 86.250952
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.966155
final value 94.488534
converged
Fitting Repeat 5
# weights: 103
initial value 102.968927
iter 10 value 94.446397
iter 20 value 89.180107
iter 30 value 88.901884
iter 40 value 87.659918
iter 50 value 87.533244
iter 60 value 87.454136
iter 70 value 87.411519
final value 87.411322
converged
Fitting Repeat 1
# weights: 305
initial value 103.623080
iter 10 value 92.340144
iter 20 value 88.982985
iter 30 value 88.475746
iter 40 value 86.640246
iter 50 value 86.462557
iter 60 value 85.895131
iter 70 value 85.347024
iter 80 value 84.991681
iter 90 value 84.928021
iter 100 value 84.924103
final value 84.924103
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.307562
iter 10 value 94.450269
iter 20 value 89.904315
iter 30 value 88.052944
iter 40 value 87.797262
iter 50 value 87.590043
iter 60 value 87.509669
iter 70 value 87.416718
iter 80 value 87.332749
iter 90 value 86.623315
iter 100 value 86.491611
final value 86.491611
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.803192
iter 10 value 93.718458
iter 20 value 87.843951
iter 30 value 87.375415
iter 40 value 86.079364
iter 50 value 85.378697
iter 60 value 84.534865
iter 70 value 84.303934
iter 80 value 83.983540
iter 90 value 83.900173
iter 100 value 83.840864
final value 83.840864
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.012978
iter 10 value 94.675917
iter 20 value 94.648416
iter 30 value 91.161205
iter 40 value 90.470033
iter 50 value 89.394905
iter 60 value 88.603185
iter 70 value 86.783800
iter 80 value 86.258929
iter 90 value 85.867762
iter 100 value 85.670702
final value 85.670702
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.461632
iter 10 value 96.665313
iter 20 value 94.851856
iter 30 value 89.411308
iter 40 value 88.318850
iter 50 value 88.059617
iter 60 value 87.092286
iter 70 value 85.473934
iter 80 value 85.264909
iter 90 value 85.080300
iter 100 value 84.387470
final value 84.387470
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 136.233906
iter 10 value 94.945924
iter 20 value 88.782017
iter 30 value 86.434630
iter 40 value 85.392142
iter 50 value 84.773165
iter 60 value 84.074893
iter 70 value 83.296665
iter 80 value 83.027144
iter 90 value 82.937439
iter 100 value 82.907670
final value 82.907670
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.797583
iter 10 value 94.528952
iter 20 value 94.336457
iter 30 value 92.069480
iter 40 value 89.740882
iter 50 value 89.304521
iter 60 value 87.971192
iter 70 value 86.037000
iter 80 value 85.337104
iter 90 value 84.944108
iter 100 value 84.751201
final value 84.751201
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.181661
iter 10 value 95.216413
iter 20 value 94.492750
iter 30 value 94.416029
iter 40 value 93.144826
iter 50 value 88.803176
iter 60 value 86.309185
iter 70 value 85.706268
iter 80 value 85.097258
iter 90 value 84.724380
iter 100 value 84.502403
final value 84.502403
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.915072
iter 10 value 94.375453
iter 20 value 91.977108
iter 30 value 91.104658
iter 40 value 88.289467
iter 50 value 86.066362
iter 60 value 85.316014
iter 70 value 84.472483
iter 80 value 84.029362
iter 90 value 83.831486
iter 100 value 83.685024
final value 83.685024
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.599161
iter 10 value 94.575325
iter 20 value 94.490268
iter 30 value 94.476200
iter 40 value 93.404686
iter 50 value 86.336695
iter 60 value 84.456177
iter 70 value 84.072220
iter 80 value 83.867467
iter 90 value 83.619543
iter 100 value 83.571668
final value 83.571668
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 108.154267
iter 10 value 94.486073
iter 20 value 94.484291
iter 30 value 93.306971
iter 40 value 88.958611
iter 50 value 88.941852
iter 60 value 88.940754
iter 70 value 88.651310
iter 80 value 88.647693
final value 88.647525
converged
Fitting Repeat 2
# weights: 103
initial value 95.831450
final value 94.485929
converged
Fitting Repeat 3
# weights: 103
initial value 101.526837
iter 10 value 94.485773
iter 20 value 94.484225
iter 30 value 94.172706
iter 40 value 90.969491
iter 50 value 87.964465
iter 60 value 87.913052
iter 70 value 87.903544
final value 87.903484
converged
Fitting Repeat 4
# weights: 103
initial value 97.900311
iter 10 value 94.485898
final value 94.484207
converged
Fitting Repeat 5
# weights: 103
initial value 97.313534
final value 94.485634
converged
Fitting Repeat 1
# weights: 305
initial value 105.268164
iter 10 value 94.488990
iter 20 value 89.893219
iter 30 value 87.318510
iter 40 value 86.550965
iter 50 value 86.312570
iter 60 value 85.968829
iter 70 value 85.405475
iter 80 value 85.327442
iter 90 value 85.309364
iter 100 value 84.822661
final value 84.822661
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.761229
iter 10 value 94.471977
iter 20 value 94.467927
iter 30 value 94.462569
iter 40 value 93.371536
iter 50 value 89.664674
iter 60 value 88.082406
iter 70 value 87.136955
iter 80 value 87.131852
iter 90 value 87.129876
iter 100 value 87.127623
final value 87.127623
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.203470
iter 10 value 94.488941
iter 20 value 94.470443
final value 94.467425
converged
Fitting Repeat 4
# weights: 305
initial value 103.345008
iter 10 value 94.489091
iter 20 value 94.484213
iter 30 value 94.419793
iter 40 value 92.436436
iter 50 value 92.292439
final value 92.290010
converged
Fitting Repeat 5
# weights: 305
initial value 96.132584
iter 10 value 94.471583
iter 20 value 94.467781
final value 94.467522
converged
Fitting Repeat 1
# weights: 507
initial value 103.363908
iter 10 value 94.492235
iter 20 value 94.448253
iter 30 value 93.392730
iter 40 value 89.764306
iter 50 value 89.316689
final value 89.311460
converged
Fitting Repeat 2
# weights: 507
initial value 100.382529
iter 10 value 94.469504
iter 20 value 92.253161
iter 30 value 88.678774
iter 40 value 87.097918
iter 50 value 82.942404
iter 60 value 82.401193
iter 70 value 82.285962
iter 80 value 82.280536
iter 90 value 82.280303
iter 100 value 82.280038
final value 82.280038
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.039340
iter 10 value 94.492854
iter 20 value 94.477253
iter 30 value 94.443337
final value 94.443328
converged
Fitting Repeat 4
# weights: 507
initial value 95.822799
iter 10 value 94.436023
iter 20 value 94.393880
iter 30 value 94.393146
iter 40 value 89.727368
iter 50 value 89.720261
iter 60 value 87.765067
final value 87.747931
converged
Fitting Repeat 5
# weights: 507
initial value 109.863963
iter 10 value 94.492455
iter 20 value 94.165313
iter 30 value 90.821242
iter 40 value 90.241087
iter 50 value 89.171432
iter 60 value 89.101651
iter 70 value 88.673646
iter 80 value 88.613416
iter 90 value 88.609365
iter 100 value 88.043962
final value 88.043962
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 116.316640
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.816029
final value 93.653870
converged
Fitting Repeat 3
# weights: 103
initial value 95.959669
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.556018
final value 93.410244
converged
Fitting Repeat 5
# weights: 103
initial value 96.207341
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.962742
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 97.386000
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 122.548360
final value 93.582418
converged
Fitting Repeat 4
# weights: 305
initial value 98.840757
iter 10 value 93.504815
iter 20 value 93.322366
iter 30 value 93.303065
final value 93.302943
converged
Fitting Repeat 5
# weights: 305
initial value 96.201995
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 100.324221
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 101.197048
iter 10 value 93.069215
iter 20 value 92.062305
iter 30 value 90.429271
iter 40 value 89.684971
iter 50 value 87.940100
iter 60 value 84.467348
iter 70 value 84.295682
iter 80 value 84.225570
iter 90 value 84.220924
final value 84.220909
converged
Fitting Repeat 3
# weights: 507
initial value 132.439471
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 100.161371
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 114.905147
final value 93.582418
converged
Fitting Repeat 1
# weights: 103
initial value 97.711588
iter 10 value 94.054963
iter 20 value 93.631444
iter 30 value 93.438791
iter 40 value 93.357409
iter 50 value 87.512695
iter 60 value 87.107655
iter 70 value 83.014653
iter 80 value 82.313380
iter 90 value 82.197887
iter 100 value 82.087861
final value 82.087861
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.073950
iter 10 value 93.751503
iter 20 value 85.337071
iter 30 value 85.047747
iter 40 value 82.988072
iter 50 value 82.938793
final value 82.938693
converged
Fitting Repeat 3
# weights: 103
initial value 98.613635
iter 10 value 94.058725
iter 20 value 93.853335
iter 30 value 91.293748
iter 40 value 88.498190
iter 50 value 87.394801
iter 60 value 86.639009
iter 70 value 86.427199
iter 80 value 83.507522
iter 90 value 80.544499
iter 100 value 80.149303
final value 80.149303
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.051082
iter 10 value 94.036470
iter 20 value 92.612349
iter 30 value 86.936682
iter 40 value 82.636028
iter 50 value 81.705728
iter 60 value 80.635878
iter 70 value 80.178863
iter 80 value 79.823495
iter 90 value 79.812122
final value 79.811342
converged
Fitting Repeat 5
# weights: 103
initial value 97.381994
iter 10 value 93.501842
iter 20 value 91.844905
iter 30 value 82.710605
iter 40 value 82.072964
iter 50 value 81.911352
iter 60 value 80.457387
iter 70 value 79.944733
iter 80 value 79.811444
final value 79.811342
converged
Fitting Repeat 1
# weights: 305
initial value 113.904569
iter 10 value 94.002255
iter 20 value 84.524303
iter 30 value 82.691770
iter 40 value 82.224734
iter 50 value 80.587160
iter 60 value 80.217603
iter 70 value 80.026651
iter 80 value 79.890556
iter 90 value 79.886895
iter 100 value 79.858416
final value 79.858416
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.276803
iter 10 value 93.914229
iter 20 value 90.009372
iter 30 value 86.357466
iter 40 value 83.952532
iter 50 value 81.283464
iter 60 value 80.513858
iter 70 value 80.256726
iter 80 value 80.033224
iter 90 value 79.820426
iter 100 value 79.781752
final value 79.781752
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.071332
iter 10 value 92.553666
iter 20 value 87.927072
iter 30 value 87.560391
iter 40 value 87.238458
iter 50 value 84.571633
iter 60 value 84.038462
iter 70 value 81.944532
iter 80 value 81.371837
iter 90 value 79.983742
iter 100 value 79.238073
final value 79.238073
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 122.154973
iter 10 value 94.528785
iter 20 value 85.913512
iter 30 value 84.559700
iter 40 value 84.004109
iter 50 value 83.914789
iter 60 value 83.544931
iter 70 value 83.095367
iter 80 value 82.888402
iter 90 value 82.219996
iter 100 value 80.158777
final value 80.158777
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.636927
iter 10 value 93.809524
iter 20 value 93.705206
iter 30 value 87.083175
iter 40 value 84.512469
iter 50 value 83.834874
iter 60 value 83.352234
iter 70 value 80.840327
iter 80 value 79.951908
iter 90 value 79.760955
iter 100 value 79.040493
final value 79.040493
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.222909
iter 10 value 93.930043
iter 20 value 88.037951
iter 30 value 87.211483
iter 40 value 82.077344
iter 50 value 80.130059
iter 60 value 79.803355
iter 70 value 79.185023
iter 80 value 78.533757
iter 90 value 78.341890
iter 100 value 78.289963
final value 78.289963
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.118288
iter 10 value 93.775684
iter 20 value 91.823624
iter 30 value 84.949562
iter 40 value 84.111352
iter 50 value 81.752770
iter 60 value 81.193213
iter 70 value 80.952323
iter 80 value 80.830825
iter 90 value 80.714260
iter 100 value 80.341584
final value 80.341584
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.961434
iter 10 value 91.096359
iter 20 value 84.789736
iter 30 value 80.966130
iter 40 value 80.353122
iter 50 value 79.486899
iter 60 value 79.226358
iter 70 value 79.158438
iter 80 value 79.045366
iter 90 value 78.937836
iter 100 value 78.892545
final value 78.892545
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 125.316977
iter 10 value 85.350438
iter 20 value 84.686523
iter 30 value 84.238853
iter 40 value 83.476849
iter 50 value 82.776958
iter 60 value 81.151156
iter 70 value 79.919226
iter 80 value 79.604758
iter 90 value 79.222647
iter 100 value 79.156076
final value 79.156076
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 125.195192
iter 10 value 94.036193
iter 20 value 92.044204
iter 30 value 87.047590
iter 40 value 83.664366
iter 50 value 81.030227
iter 60 value 79.909268
iter 70 value 79.493739
iter 80 value 79.103077
iter 90 value 78.909384
iter 100 value 78.656305
final value 78.656305
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.158392
final value 94.054551
converged
Fitting Repeat 2
# weights: 103
initial value 98.068382
final value 94.054381
converged
Fitting Repeat 3
# weights: 103
initial value 99.332149
iter 10 value 94.054501
iter 20 value 94.052824
iter 30 value 93.493755
iter 40 value 93.249924
final value 93.247547
converged
Fitting Repeat 4
# weights: 103
initial value 100.714249
final value 94.054480
converged
Fitting Repeat 5
# weights: 103
initial value 97.495194
final value 94.054448
converged
Fitting Repeat 1
# weights: 305
initial value 104.160668
iter 10 value 94.063807
iter 20 value 94.058868
iter 30 value 89.847485
iter 40 value 84.694046
iter 50 value 82.815220
iter 60 value 82.747228
iter 70 value 82.745914
iter 80 value 82.745434
iter 90 value 82.298107
iter 100 value 81.653911
final value 81.653911
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 127.075250
iter 10 value 94.124246
iter 20 value 93.619993
iter 30 value 89.343315
iter 40 value 86.434378
iter 50 value 86.394287
iter 60 value 86.227100
iter 70 value 86.195632
iter 80 value 84.916792
iter 90 value 84.887388
iter 100 value 84.887180
final value 84.887180
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.520524
iter 10 value 94.056331
iter 20 value 87.809512
iter 30 value 86.927879
iter 40 value 86.910336
final value 86.910241
converged
Fitting Repeat 4
# weights: 305
initial value 99.021478
iter 10 value 94.057907
iter 20 value 94.052933
iter 30 value 93.644667
iter 40 value 83.995729
iter 50 value 82.949565
iter 60 value 82.247938
iter 70 value 81.809571
final value 81.809568
converged
Fitting Repeat 5
# weights: 305
initial value 107.159197
iter 10 value 94.057528
iter 20 value 93.386961
iter 30 value 93.256116
final value 93.247582
converged
Fitting Repeat 1
# weights: 507
initial value 102.829208
iter 10 value 93.590382
iter 20 value 93.581902
iter 30 value 93.306288
iter 40 value 93.248131
final value 93.247835
converged
Fitting Repeat 2
# weights: 507
initial value 99.453637
iter 10 value 86.770648
iter 20 value 81.406247
iter 30 value 80.892756
iter 40 value 80.682317
iter 50 value 80.668837
iter 60 value 80.648303
final value 80.646820
converged
Fitting Repeat 3
# weights: 507
initial value 107.754385
iter 10 value 93.775794
iter 20 value 93.498232
iter 30 value 93.418978
iter 40 value 93.266900
iter 50 value 93.255839
final value 93.251699
converged
Fitting Repeat 4
# weights: 507
initial value 114.417452
iter 10 value 88.548298
iter 20 value 83.541393
iter 30 value 82.875732
iter 40 value 82.874662
iter 50 value 82.870903
iter 60 value 82.764572
iter 70 value 82.624773
iter 80 value 82.415334
iter 90 value 82.408731
final value 82.408612
converged
Fitting Repeat 5
# weights: 507
initial value 96.311457
iter 10 value 93.350011
iter 20 value 93.255940
iter 30 value 88.504040
iter 40 value 82.518739
iter 50 value 81.901503
iter 60 value 78.749572
iter 70 value 77.850454
iter 80 value 77.659793
iter 90 value 77.212572
iter 100 value 77.017050
final value 77.017050
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 118.484769
iter 10 value 117.199218
iter 20 value 117.196577
iter 30 value 112.709317
iter 40 value 106.557652
iter 50 value 105.074892
iter 60 value 105.070467
final value 105.069684
converged
Fitting Repeat 2
# weights: 305
initial value 124.132203
iter 10 value 117.895000
iter 20 value 117.642641
iter 30 value 106.672525
iter 40 value 102.797274
iter 50 value 101.751005
iter 60 value 101.485612
iter 70 value 101.460422
iter 80 value 101.105860
final value 101.105761
converged
Fitting Repeat 3
# weights: 305
initial value 144.499533
iter 10 value 117.895575
iter 20 value 117.664014
iter 30 value 115.616610
final value 115.616592
converged
Fitting Repeat 4
# weights: 305
initial value 122.150151
iter 10 value 117.895915
iter 20 value 117.834716
iter 30 value 117.515002
iter 40 value 117.513214
iter 50 value 117.512160
iter 60 value 117.511392
iter 70 value 117.509826
iter 80 value 117.070670
iter 90 value 115.696042
iter 100 value 115.165379
final value 115.165379
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 127.203909
iter 10 value 117.894995
iter 20 value 117.890374
iter 30 value 112.591213
iter 40 value 107.006038
iter 50 value 107.005037
iter 60 value 106.693530
iter 70 value 103.609007
iter 80 value 101.615803
iter 90 value 100.693238
iter 100 value 99.940485
final value 99.940485
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Feb 22 06:43:30 2023
***********************************************
Number of test functions: 8
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 8 test functions, 0 errors, 0 failures
Number of test functions: 8
Number of errors: 0
Number of failures: 0
Warning messages:
1: The `.data` argument of `add_column()` must have unique names as of tibble
3.0.0.
ℹ Use `.name_repair = "minimal"`.
ℹ The deprecated feature was likely used in the tibble package.
Please report the issue at <https://github.com/tidyverse/tibble/issues>.
2: `repeats` has no meaning for this resampling method.
3: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
52.751 1.519 98.714
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 37.752 | 0.440 | 38.193 | |
| FreqInteractors | 0.281 | 0.008 | 0.290 | |
| calculateAAC | 0.071 | 0.008 | 0.080 | |
| calculateAutocor | 0.748 | 0.012 | 0.760 | |
| calculateBE | 0.235 | 0.004 | 0.239 | |
| calculateCTDC | 0.133 | 0.004 | 0.136 | |
| calculateCTDD | 0.911 | 0.024 | 0.936 | |
| calculateCTDT | 0.302 | 0.004 | 0.306 | |
| calculateCTriad | 0.48 | 0.00 | 0.48 | |
| calculateDC | 0.135 | 0.004 | 0.138 | |
| calculateF | 0.686 | 0.008 | 0.693 | |
| calculateKSAAP | 0.157 | 0.000 | 0.157 | |
| calculateQD_Sm | 2.373 | 0.036 | 2.409 | |
| calculateTC | 2.44 | 0.04 | 2.48 | |
| calculateTC_Sm | 0.373 | 0.000 | 0.373 | |
| corr_plot | 38.229 | 0.432 | 38.664 | |
| enrichfindP | 0.444 | 0.033 | 16.203 | |
| enrichfind_hp | 0.039 | 0.008 | 1.563 | |
| enrichplot | 0.358 | 0.028 | 0.386 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 1.018 | 0.024 | 10.678 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.002 | |
| plotPPI | 0.074 | 0.008 | 0.082 | |
| pred_ensembel | 18.779 | 0.537 | 17.000 | |
| var_imp | 38.651 | 0.600 | 39.254 | |