Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-23 01:34:13 -0000 (Thu, 23 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4245 |
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To the developers/maintainers of the MultiBaC package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiBaC.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1285/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MultiBaC 1.9.0 (landing page) The package maintainer
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: MultiBaC |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MultiBaC_1.9.0.tar.gz |
StartedAt: 2023-02-22 08:52:27 -0000 (Wed, 22 Feb 2023) |
EndedAt: 2023-02-22 08:56:07 -0000 (Wed, 22 Feb 2023) |
EllapsedTime: 220.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MultiBaC.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MultiBaC_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/MultiBaC.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘MultiBaC/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MultiBaC’ version ‘1.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MultiBaC’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed MultiBaC 13.272 0.256 13.527 explained_varPlot 12.748 0.000 12.748 Q2_plot 12.418 0.280 12.698 inner_relPlot 12.629 0.048 12.677 plot 12.577 0.055 12.632 batchCorrection 12.470 0.107 12.578 plot_pca 12.420 0.024 12.444 ARSyNbac 11.534 0.424 11.959 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘MultiBaC.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
MultiBaC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL MultiBaC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘MultiBaC’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiBaC)
MultiBaC.Rcheck/MultiBaC-Ex.timings
name | user | system | elapsed | |
ARSyNbac | 11.534 | 0.424 | 11.959 | |
MultiBaC | 13.272 | 0.256 | 13.527 | |
Q2_plot | 12.418 | 0.280 | 12.698 | |
batchCorrection | 12.470 | 0.107 | 12.578 | |
batchEstPlot | 1.076 | 0.036 | 1.111 | |
createMbac | 0.464 | 0.000 | 0.463 | |
explained_varPlot | 12.748 | 0.000 | 12.748 | |
genMissingOmics | 1.250 | 0.003 | 1.254 | |
genModelList | 0.617 | 0.001 | 0.617 | |
inner_relPlot | 12.629 | 0.048 | 12.677 | |
multiyeast | 0.003 | 0.000 | 0.003 | |
plot | 12.577 | 0.055 | 12.632 | |
plot_pca | 12.420 | 0.024 | 12.444 | |
summary | 0.461 | 0.000 | 0.461 | |