Back to Build/check report for BioC 3.17
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This page was generated on 2023-02-23 01:34:16 -0000 (Thu, 23 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4245
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CHECK results for OpenStats on kunpeng1


To the developers/maintainers of the OpenStats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1394/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.11.0  (landing page)
Hamed Haseli Mashhadi
Snapshot Date: 2023-02-21 12:29:53 -0000 (Tue, 21 Feb 2023)
git_url: https://git.bioconductor.org/packages/OpenStats
git_branch: master
git_last_commit: 2664620
git_last_commit_date: 2022-11-01 15:21:54 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: OpenStats
Version: 1.11.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings OpenStats_1.11.0.tar.gz
StartedAt: 2023-02-22 09:35:02 -0000 (Wed, 22 Feb 2023)
EndedAt: 2023-02-22 09:37:32 -0000 (Wed, 22 Feb 2023)
EllapsedTime: 150.4 seconds
RetCode: 0
Status:   OK  
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings OpenStats_1.11.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/OpenStats.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘OpenStats.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/OpenStats.Rcheck/00check.log’
for details.



Installation output

OpenStats.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OpenStats
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘OpenStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis2.4300.0392.472
OpenStatsBuilder000
OpenStatsComplementarySplit1.7910.0081.798
OpenStatsList1.1750.0621.723
OpenStatsReport2.6140.1752.902
plot.OpenStats0.5730.0330.648
plot.OpenStatsComplementarySplit1.9780.0562.163
plot.OpenStatsFE0.1030.0040.151
plot.OpenStatsMM1.1160.0841.332
plot.OpenStatsRR0.3190.0160.335
print.OpenStats0.5250.0310.584
print.OpenStatsComplementarySplit1.8650.1001.966
print.OpenStatsFE0.0890.0040.093
print.OpenStatsMM0.6710.0480.720
print.OpenStatsRR0.3190.0280.347
summary.OpenStats0.5360.0160.575
summary.OpenStatsComplementarySplit1.7820.0721.854
summary.OpenStatsFE0.0910.0000.091
summary.OpenStatsMM0.6690.0120.681
summary.OpenStatsRR0.3390.0080.346