| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-23 01:33:46 -0000 (Thu, 23 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4245 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbChebi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 179/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.5.0 (landing page) Pierrick Roger
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: biodbChebi |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings biodbChebi_1.5.0.tar.gz |
| StartedAt: 2023-02-22 01:23:17 -0000 (Wed, 22 Feb 2023) |
| EndedAt: 2023-02-22 01:25:08 -0000 (Wed, 22 Feb 2023) |
| EllapsedTime: 111.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings biodbChebi_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/biodbChebi.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘biodbChebi.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2023-02-22 01:24:14.660][biodb::testContext]
biodb.INFO [2023-02-22 01:24:14.663][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:14.664][biodb::testContext] Test context - Generic tests
biodb.INFO [2023-02-22 01:24:14.666][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:14.667][biodb::testContext]
biodb.INFO [2023-02-22 01:24:14.689][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:14.692][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:14.702][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:14.704][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-22 01:24:14.705][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-22 01:24:14.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.711][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-22 01:24:14.740][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-22 01:24:14.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.746][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-22 01:24:14.748][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-22 01:24:14.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.753][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-22 01:24:14.755][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-22 01:24:14.757][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-22 01:24:14.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.763][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-22 01:24:14.764][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-22 01:24:14.766][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-22 01:24:14.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.772][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-22 01:24:14.774][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-22 01:24:14.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.780][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-22 01:24:14.781][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-22 01:24:14.783][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-22 01:24:14.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.789][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-22 01:24:14.790][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-22 01:24:14.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.796][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-22 01:24:14.798][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-22 01:24:14.799][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-22 01:24:14.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.805][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:14.806][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-22 01:24:14.808][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-22 01:24:14.810][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-22 01:24:14.811][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-22 01:24:14.813][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-22 01:24:14.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.818][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-22 01:24:14.820][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-22 01:24:14.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.826][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-22 01:24:14.827][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-22 01:24:14.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.833][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-22 01:24:14.835][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-22 01:24:14.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.840][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-22 01:24:14.842][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-22 01:24:14.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.848][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-22 01:24:14.849][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-22 01:24:14.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.855][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:14.856][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-22 01:24:14.861][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-22 01:24:14.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.867][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-22 01:24:14.868][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-22 01:24:14.870][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-22 01:24:14.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:14.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:14.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:14.879][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-22 01:24:14.943][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:14.965][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-22 01:24:14.967][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:14.968][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:14.969][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:14.971][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:14.972][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:14.973][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:14.975][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:14.976][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:14.977][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:14.979][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-22 01:24:14.980][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:14.981][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:14.983][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:14.984][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:14.984][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:14.984][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:14.984][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:14.984][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:14.985][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:14.987][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:14.988][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:14.989][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:14.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:14.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:14.993][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:14.994][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:14.996][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:14.997][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:14.998][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.000][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.001][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-22 01:24:15.004][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.005][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:15.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.008][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:15.009][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.010][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.012][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.013][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.014][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:15.016][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:15.017][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.019][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-22 01:24:15.020][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:15.021][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.023][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.024][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:15.024][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:15.024][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:15.024][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:15.024][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:15.025][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:15.027][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:15.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.032][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.033][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.034][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.036][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:15.037][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:15.038][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.039][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.041][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-22 01:24:15.043][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.045][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-22 01:24:15.046][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.048][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:15.049][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.050][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.052][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.053][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.054][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:15.056][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:15.057][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.059][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-22 01:24:15.060][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:15.061][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.063][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.064][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.065][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:15.067][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.068][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.069][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:15.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.073][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.074][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.076][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:15.077][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:15.078][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.080][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.081][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-22 01:24:15.084][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.085][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:15.087][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.088][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:15.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.091][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.092][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.094][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.095][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:15.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:15.098][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.099][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-22 01:24:15.101][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:15.102][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.105][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.106][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:15.108][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.109][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.110][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:15.112][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.113][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.114][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.116][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.117][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:15.118][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:15.120][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.121][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:15.127][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:15.128][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.239][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-22 01:24:15.246][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-22 01:24:15.248][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-22 01:24:15.250][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-22 01:24:15.253][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:15.255][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-22 01:24:15.257][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:15.259][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:15.261][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-22 01:24:15.263][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-22 01:24:15.264][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:15.267][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-22 01:24:15.268][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:15.280][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:15.282][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-22 01:24:15.284][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-22 01:24:15.287][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-22 01:24:15.289][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-22 01:24:15.291][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:15.293][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-22 01:24:15.295][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-22 01:24:15.297][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-22 01:24:15.299][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-22 01:24:15.301][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-22 01:24:15.303][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-22 01:24:15.305][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-22 01:24:15.307][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-22 01:24:15.309][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-22 01:24:15.311][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-22 01:24:15.313][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-22 01:24:15.315][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-22 01:24:15.317][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-22 01:24:15.319][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-22 01:24:15.321][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-22 01:24:15.323][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-22 01:24:15.324][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-22 01:24:15.326][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-22 01:24:15.328][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-22 01:24:15.331][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-22 01:24:15.333][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-22 01:24:15.335][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-22 01:24:15.337][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-22 01:24:15.339][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-22 01:24:15.341][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-22 01:24:15.343][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-22 01:24:15.345][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-22 01:24:15.347][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-22 01:24:15.349][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-22 01:24:15.351][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-22 01:24:15.353][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-22 01:24:15.355][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-22 01:24:15.357][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-22 01:24:15.359][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-22 01:24:15.361][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-22 01:24:15.363][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-22 01:24:15.365][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-22 01:24:15.367][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-22 01:24:15.369][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-22 01:24:15.371][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-22 01:24:15.372][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-22 01:24:15.374][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-22 01:24:15.376][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-22 01:24:15.378][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-22 01:24:15.381][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-22 01:24:15.383][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-22 01:24:15.384][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-22 01:24:15.387][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:15.389][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:15.391][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-22 01:24:15.393][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-22 01:24:15.395][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-22 01:24:15.397][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-22 01:24:15.399][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-22 01:24:15.401][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-22 01:24:15.403][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-22 01:24:15.405][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-22 01:24:15.407][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-22 01:24:15.409][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-22 01:24:15.411][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-22 01:24:15.413][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-22 01:24:15.415][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-22 01:24:15.417][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-22 01:24:15.419][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-22 01:24:15.428][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-22 01:24:15.430][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:15.435][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:15.436][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.439][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:15.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:15.602][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:15.625][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-22 01:24:15.628][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.629][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.631][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.632][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:15.634][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.635][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.636][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.638][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-22 01:24:15.639][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-22 01:24:15.641][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:15.642][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.643][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-22 01:24:15.645][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-22 01:24:15.646][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-22 01:24:15.648][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:15.650][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:15.650][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:15.650][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:15.651][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-22 01:24:15.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.655][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:15.657][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:15.658][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:15.659][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:15.661][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:15.661][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-22 01:24:15.662][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:15.663][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:15.665][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:15.666][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-22 01:24:15.666][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-22 01:24:15.675][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:15.678][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:15.680][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-22 01:24:15.683][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:15.685][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:15.688][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:15.723][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-22 01:24:15.725][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-22 01:24:15.731][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-22 01:24:15.738][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-22 01:24:15.744][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:15.746][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:15.748][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-22 01:24:15.749][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-22 01:24:15.774][biodb::testThat]
biodb.INFO [2023-02-22 01:24:15.776][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2023-02-22 01:24:15.777][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:15.779][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:15.785][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2023-02-22 01:24:15.793][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:15.798][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:15.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:15.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:15.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:15.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:15.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:15.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:15.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:15.852][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:15.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:15.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.857][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.887][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:15.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:15.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.892][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.942][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:15.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:15.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.946][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:15.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:15.960][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:15.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.963][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:15.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:15.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.979][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.991][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:15.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:15.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:15.995][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:15.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.024][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:16.025][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.028][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.030][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:16.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.044][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.056][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.061][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.073][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:16.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.077][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:16.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.093][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:16.219][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2023-02-22 01:24:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:16.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-22 01:24:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-22 01:24:16.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.305][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-22 01:24:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-22 01:24:16.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-02-22 01:24:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-02-22 01:24:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-02-22 01:24:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-02-22 01:24:16.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.513][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.518][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:16.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.562][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:16.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.598][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.603][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:16.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.638][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:16.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:16.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.643][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.721][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:16.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.762][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.797][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:16.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:16.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.802][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.837][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.842][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.865][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.871][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.881][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:16.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.921][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.922][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:16.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.962][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:16.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:16.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:16.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:16.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:16.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:16.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:16.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:16.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:17.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.002][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:17.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.028][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.032][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.041][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:17.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:17.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.045][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.054][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:17.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:17.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.058][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:17.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.071][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:17.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:17.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.084][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:17.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:17.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.098][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.106][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:17.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:17.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.111][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.125][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.134][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-22 01:24:17.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:17.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.139][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.147][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.152][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:17.162][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.165][ef$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:17.175][biodb::testThat]
biodb.INFO [2023-02-22 01:24:17.177][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-02-22 01:24:17.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:17.180][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:17.200][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2023-02-22 01:24:17.211][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:17.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2023-02-22 01:24:17.219][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:17.221][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2023-02-22 01:24:17.222][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:17.283][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:17.285][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:17.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:17.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:17.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:17.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:17.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:17.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:17.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:17.306][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.310][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.356][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:17.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:17.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.361][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:17.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.373][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:17.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:17.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.377][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:17.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:17.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:17.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.394][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:17.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:17.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.410][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:17.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:17.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.427][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.439][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:17.440][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:17.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.443][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.460][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.471][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.476][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:17.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:17.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.493][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:17.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:17.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.509][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:17.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:17.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:17.585][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2023-02-22 01:24:17.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-02-22 01:24:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-02-22 01:24:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-02-22 01:24:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-02-22 01:24:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-02-22 01:24:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-02-22 01:24:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:17.613][biodb::testThat]
biodb.INFO [2023-02-22 01:24:17.614][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2023-02-22 01:24:17.615][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:17.617][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:17.621][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.625][ef$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:17.634][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2023-02-22 01:24:17.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:17.695][function(conn, opt)] With value "squalene".
biodb.DEBUG[2023-02-22 01:24:17.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-22 01:24:17.743][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:17.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-22 01:24:17.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:17.770][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-22 01:24:17.803][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:17.808][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:17.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:17.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:17.815][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-22 01:24:17.817][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2023-02-22 01:24:17.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:17.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.843][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.844][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:17.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:17.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.849][ef$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:17.851][biodb::testThat]
biodb.INFO [2023-02-22 01:24:17.853][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2023-02-22 01:24:17.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:17.856][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:17.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:18.014][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:18.018][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:18.020][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:18.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:18.024][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2023-02-22 01:24:18.048][biodb::testThat]
biodb.INFO [2023-02-22 01:24:18.050][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2023-02-22 01:24:18.051][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:18.052][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:18.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:18.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-02-22 01:24:18.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-02-22 01:24:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-02-22 01:24:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-02-22 01:24:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:18.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:18.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:18.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:18.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-22 01:24:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-02-22 01:24:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-02-22 01:24:18.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-02-22 01:24:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-02-22 01:24:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:18.274][biodb::testThat]
biodb.INFO [2023-02-22 01:24:18.276][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-02-22 01:24:18.277][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:18.279][biodb::testThat]
biodb.INFO [2023-02-22 01:24:18.287][biodb::testThat]
biodb.INFO [2023-02-22 01:24:18.288][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-02-22 01:24:18.290][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:18.291][biodb::testThat]
biodb.INFO [2023-02-22 01:24:18.299][biodb::testThat]
biodb.INFO [2023-02-22 01:24:18.301][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2023-02-22 01:24:18.302][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:18.304][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:18.309][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2023-02-22 01:24:19.541][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2023-02-22 01:24:21.895][biodb::testThat]
biodb.INFO [2023-02-22 01:24:21.897][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2023-02-22 01:24:21.898][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:21.899][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:22.688][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2023-02-22 01:24:23.433][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:23.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:23.436][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.437][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:23.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:23.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.443][ef$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:23.446][biodb::testThat]
biodb.INFO [2023-02-22 01:24:23.447][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2023-02-22 01:24:23.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:23.450][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:23.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:23.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:23.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:23.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:23.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:23.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:23.608][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:23.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:23.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:23.614][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-22 01:24:23.738][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:23.743][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:23.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:23.747][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:23.749][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2023-02-22 01:24:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-22 01:24:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-22 01:24:23.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:23.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:23.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:23.883][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:23.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-22 01:24:23.887][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:23.890][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-22 01:24:23.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:23.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:23.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:23.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:23.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:23.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:23.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:23.909][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2023-02-22 01:24:23.973][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:23.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2023-02-22 01:24:23.978][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:23.979][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:23.980][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:23.982][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:23.983][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:23.984][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:23.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:23.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:23.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:23.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:24.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:24.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:24.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:24.004][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2023-02-22 01:24:24.008][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:24.009][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:24.011][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2023-02-22 01:24:24.800][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2023-02-22 01:24:26.095][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:26.120][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2023-02-22 01:24:26.151][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2023-02-22 01:24:26.166][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2023-02-22 01:24:26.178][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:26.206][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:26.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:26.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:26.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:26.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:26.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:26.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:26.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:26.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:26.231][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.236][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.248][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:26.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:26.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.253][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:26.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:26.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.265][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:26.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:26.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.270][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:26.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:26.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:26.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:26.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.288][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:26.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:26.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:26.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.304][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:26.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:26.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.322][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.324][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:26.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.328][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:26.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:26.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.345][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:26.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:26.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.357][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:26.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:26.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.362][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:26.390][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:26.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.393][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:26.407][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:26.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.410][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:26.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:26.487][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2023-02-22 01:24:26.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:26.520][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:26.524][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:26.526][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-22 01:24:26.528][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:26.531][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-22 01:24:26.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:26.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:26.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:26.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:26.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:26.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:26.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:26.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:26.596][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:26.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-22 01:24:26.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:26.603][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-22 01:24:26.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:26.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:26.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:26.680][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:26.682][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-22 01:24:26.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:26.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:26.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:26.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:26.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:26.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:26.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:26.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:26.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:26.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:26.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:26.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:26.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:26.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:26.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:26.763][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2023-02-22 01:24:26.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:26.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2023-02-22 01:24:26.768][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:26.770][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:26.772][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:26.773][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:26.774][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:26.776][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:26.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:26.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:26.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:26.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:26.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:26.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:26.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:26.813][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2023-02-22 01:24:26.835][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:26.837][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:26.867][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2023-02-22 01:24:27.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2023-02-22 01:24:28.344][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:28.354][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2023-02-22 01:24:28.369][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2023-02-22 01:24:28.385][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2023-02-22 01:24:28.391][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:28.414][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:28.416][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:28.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:28.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:28.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:28.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:28.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:28.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:28.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:28.436][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.440][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.451][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:28.452][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:28.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.455][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.457][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:28.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:28.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.461][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:28.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:28.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.467][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:28.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:28.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.473][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:28.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:28.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.479][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.480][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:28.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.484][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:28.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:28.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.491][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.493][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:28.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:28.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.497][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.523][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:28.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:28.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.527][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:28.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:28.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.542][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:28.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:28.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:28.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:28.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:28.605][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2023-02-22 01:24:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:28.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:28.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:28.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:28.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:28.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:28.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:28.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:28.654][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2023-02-22 01:24:28.655][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:28.658][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2023-02-22 01:24:28.659][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:28.661][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:28.662][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:28.664][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:28.666][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:28.667][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:28.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:28.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:28.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:28.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:28.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:28.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:28.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:28.687][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2023-02-22 01:24:28.691][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:28.693][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:28.694][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2023-02-22 01:24:29.458][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2023-02-22 01:24:30.237][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:30.247][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2023-02-22 01:24:30.263][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2023-02-22 01:24:30.279][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2023-02-22 01:24:30.285][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:30.309][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:30.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:30.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:30.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:30.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:30.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:30.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:30.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:30.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:30.331][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.335][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.347][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:30.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:30.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.351][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.353][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:30.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.357][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:30.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:30.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.364][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:30.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:30.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.370][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:30.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:30.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.377][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.379][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:30.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.383][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:30.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.390][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.391][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:30.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.396][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:30.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.408][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:30.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:30.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.412][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:30.426][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:30.428][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.429][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:30.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:30.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:30.502][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2023-02-22 01:24:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:30.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:30.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:30.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:30.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:30.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:30.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:30.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:30.558][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2023-02-22 01:24:30.560][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:30.563][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2023-02-22 01:24:30.565][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:30.567][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:30.568][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:30.570][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:30.572][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:30.573][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:30.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:30.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:30.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:30.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:30.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:30.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:30.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:30.597][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2023-02-22 01:24:30.602][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:30.603][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:30.606][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2023-02-22 01:24:31.381][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2023-02-22 01:24:32.157][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:32.168][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2023-02-22 01:24:32.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2023-02-22 01:24:32.199][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2023-02-22 01:24:32.205][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:32.251][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:32.253][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:32.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:32.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:32.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:32.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:32.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:32.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:32.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:32.274][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.279][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.291][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:32.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:32.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.295][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.297][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:32.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:32.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.302][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:32.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:32.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.308][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:32.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:32.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.314][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:32.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:32.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.320][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.322][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:32.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.326][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:32.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:32.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.332][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.334][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:32.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:32.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.338][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.351][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:32.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:32.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.355][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.367][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:32.368][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:32.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.371][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:32.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:32.435][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2023-02-22 01:24:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:32.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:32.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:32.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:32.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:32.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:32.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:32.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:32.491][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2023-02-22 01:24:32.492][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:32.494][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2023-02-22 01:24:32.496][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:32.498][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:32.499][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:32.501][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:32.502][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:32.503][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:32.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:32.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:32.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:32.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:32.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:32.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:32.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:32.523][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2023-02-22 01:24:32.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:32.528][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:32.531][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2023-02-22 01:24:33.375][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2023-02-22 01:24:34.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:34.134][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2023-02-22 01:24:34.149][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2023-02-22 01:24:34.163][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2023-02-22 01:24:34.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:34.191][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:34.193][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:34.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:34.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:34.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:34.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:34.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:34.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:34.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:34.213][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.217][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.228][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:34.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:34.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.247][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.258][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:34.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:34.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.262][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:34.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:34.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.278][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:34.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:34.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:34.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.294][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.305][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:34.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:34.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.310][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:34.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.321][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:34.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.325][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:34.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:34.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.341][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.352][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:34.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.357][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:34.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:34.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.373][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:34.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:34.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.389][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:34.462][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2023-02-22 01:24:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:34.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:34.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:34.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:34.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:34.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:34.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:34.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:34.505][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2023-02-22 01:24:34.507][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:34.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2023-02-22 01:24:34.511][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:34.512][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:34.514][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:34.515][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:34.517][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:34.518][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:34.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:34.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:34.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:34.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:34.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:34.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:34.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:34.539][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2023-02-22 01:24:34.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:34.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:34.546][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2023-02-22 01:24:35.334][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2023-02-22 01:24:36.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:36.134][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2023-02-22 01:24:36.148][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2023-02-22 01:24:36.162][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2023-02-22 01:24:36.167][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:36.189][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:36.191][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:36.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:36.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:36.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:36.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:36.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:36.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:36.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:36.211][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.216][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.241][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:36.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:36.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.245][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.256][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:36.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:36.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.260][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:36.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:36.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.276][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:36.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:36.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.292][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:36.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:36.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.307][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.319][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:36.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.323][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:36.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:36.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.339][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.351][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:36.352][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:36.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.355][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:36.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.366][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:36.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:36.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.371][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:36.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:36.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.386][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:36.459][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2023-02-22 01:24:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:36.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:36.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:36.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:36.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:36.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:36.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:36.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:36.531][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2023-02-22 01:24:36.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:36.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2023-02-22 01:24:36.536][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:36.537][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:36.539][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:36.540][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:36.542][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:36.543][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:36.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:36.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:36.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:36.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:36.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:36.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:36.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:36.563][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2023-02-22 01:24:36.567][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:36.568][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:36.570][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2023-02-22 01:24:37.319][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2023-02-22 01:24:38.093][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:38.103][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2023-02-22 01:24:38.120][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2023-02-22 01:24:38.135][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2023-02-22 01:24:38.141][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:38.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:38.167][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:38.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:38.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:38.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:38.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:38.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:38.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:38.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:38.188][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.192][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.224][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:38.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:38.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.229][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.230][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.240][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:38.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:38.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.245][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:38.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.261][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:38.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:38.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.277][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.289][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:38.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:38.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.294][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.296][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:38.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.300][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.302][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:38.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:38.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:38.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.316][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:38.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:38.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.327][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:38.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:38.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.331][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:38.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.343][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:38.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.347][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:38.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:38.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:38.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.363][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:38.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:38.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:38.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:38.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:38.441][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2023-02-22 01:24:38.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:38.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:38.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:38.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:38.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:38.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:38.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:38.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:38.497][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2023-02-22 01:24:38.499][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:38.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2023-02-22 01:24:38.503][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-02-22 01:24:38.505][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-02-22 01:24:38.506][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:38.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:38.509][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-02-22 01:24:38.511][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-02-22 01:24:38.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:38.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:38.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:38.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:38.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:38.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:38.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:38.533][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2023-02-22 01:24:38.537][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-02-22 01:24:38.538][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-02-22 01:24:38.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2023-02-22 01:24:39.296][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2023-02-22 01:24:40.038][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-02-22 01:24:40.048][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2023-02-22 01:24:40.063][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2023-02-22 01:24:40.077][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2023-02-22 01:24:40.083][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-02-22 01:24:40.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:40.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:40.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:40.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:40.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:40.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:40.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:40.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:40.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:40.129][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.133][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.144][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:40.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.148][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.173][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:40.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:40.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.178][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:40.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:40.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.193][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.208][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:40.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:40.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.223][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.225][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:40.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.229][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:40.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.245][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.256][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:40.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:40.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.260][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.272][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:40.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:40.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.276][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.287][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:40.289][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:40.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.291][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:40.361][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2023-02-22 01:24:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:40.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:40.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:40.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:40.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:40.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:40.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:40.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:40.402][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2023-02-22 01:24:40.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:40.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2023-02-22 01:24:40.408][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:40.411][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2023-02-22 01:24:40.412][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:40.435][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:40.436][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:40.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:40.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:40.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:40.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:40.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:40.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:40.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:40.456][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.460][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.471][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:40.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.476][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.487][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:40.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:40.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.491][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:40.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.506][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.522][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:40.535][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.537][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.539][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:40.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.543][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.559][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.570][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:40.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:40.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.574][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.585][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:40.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:40.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.590][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:40.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:40.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.605][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:40.686][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2023-02-22 01:24:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:40.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:40.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:40.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:40.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:40.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:40.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:40.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:40.720][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2023-02-22 01:24:40.721][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:40.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2023-02-22 01:24:40.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:40.728][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2023-02-22 01:24:40.730][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:40.752][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:40.753][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:40.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:40.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:40.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:40.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:40.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:40.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:40.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:40.773][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.777][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.788][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:40.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:40.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.792][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:40.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:40.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.803][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:40.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:40.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.808][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:40.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.823][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.838][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:40.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:40.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.854][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.855][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:40.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.860][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.884][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.895][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:40.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:40.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.899][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.910][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:40.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:40.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.915][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:40.930][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:40.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.932][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:40.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.005][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2023-02-22 01:24:41.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:41.039][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2023-02-22 01:24:41.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:41.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2023-02-22 01:24:41.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:41.048][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2023-02-22 01:24:41.049][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:41.072][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:41.073][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:41.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:41.093][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.097][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.117][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:41.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:41.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.121][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.132][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:41.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:41.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.136][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:41.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:41.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.152][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.167][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:41.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.183][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.184][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:41.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.187][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.189][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.204][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.215][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:41.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:41.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.219][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.231][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:41.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.235][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:41.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:41.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.251][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.323][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2023-02-22 01:24:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:41.365][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2023-02-22 01:24:41.367][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:41.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2023-02-22 01:24:41.371][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:41.373][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2023-02-22 01:24:41.375][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:41.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:41.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:41.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:41.418][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.422][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.433][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:41.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:41.436][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.437][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.448][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:41.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.452][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:41.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:41.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.475][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.482][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.483][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:41.485][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:41.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.488][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.490][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:41.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.494][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.496][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.511][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.523][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:41.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:41.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.527][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:41.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:41.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.544][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:41.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:41.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.561][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.643][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2023-02-22 01:24:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:41.679][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2023-02-22 01:24:41.681][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:41.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2023-02-22 01:24:41.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:41.688][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2023-02-22 01:24:41.689][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:41.713][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:41.715][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:41.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:41.734][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.739][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.749][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:41.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:41.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.754][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.765][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:41.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:41.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.769][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:41.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:41.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.784][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:41.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.790][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:41.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.796][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.797][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:41.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.802][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.817][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.828][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:41.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:41.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.832][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:41.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:41.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:41.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:41.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.856][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.867][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:41.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.871][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.933][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2023-02-22 01:24:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:41.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:41.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:41.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:41.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:41.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:41.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:41.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:41.967][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2023-02-22 01:24:41.968][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:41.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2023-02-22 01:24:41.972][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:41.974][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2023-02-22 01:24:41.976][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:41.998][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:41.999][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:42.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:42.018][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.022][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.033][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.037][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.048][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:42.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:42.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.052][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:42.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.076][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:42.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.091][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:42.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:42.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.106][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.108][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:42.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.112][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.127][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.138][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:42.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:42.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.142][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:42.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:42.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.157][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:42.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:42.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.172][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:42.244][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2023-02-22 01:24:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:42.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:42.278][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2023-02-22 01:24:42.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:42.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2023-02-22 01:24:42.284][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:42.286][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2023-02-22 01:24:42.288][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:42.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:42.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:42.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:42.340][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.344][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.356][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.360][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.371][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:42.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:42.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.375][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:42.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:42.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:42.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.390][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.406][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:42.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:42.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.421][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.423][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:42.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.427][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.429][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:42.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.442][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.453][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:42.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.457][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.469][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:42.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:42.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.473][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:42.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.488][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:42.568][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2023-02-22 01:24:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:42.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:42.602][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2023-02-22 01:24:42.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:42.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2023-02-22 01:24:42.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:42.610][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2023-02-22 01:24:42.611][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:42.633][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:42.635][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:42.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:42.655][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.659][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.670][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.674][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.685][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:42.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.689][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:42.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:42.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.705][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.720][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:42.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:42.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.735][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.737][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:42.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.741][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.756][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.776][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:42.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.780][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.791][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:42.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:42.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.796][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:42.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:42.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.811][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:42.883][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2023-02-22 01:24:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:42.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:42.917][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2023-02-22 01:24:42.918][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:42.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2023-02-22 01:24:42.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:42.925][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2023-02-22 01:24:42.927][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:42.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:42.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:42.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:42.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:42.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:42.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:42.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:42.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:42.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:42.970][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.974][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:42.985][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:42.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:42.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:42.998][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:43.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.009][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:43.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:43.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.013][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:43.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:43.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.029][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.044][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:43.057][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:43.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.059][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.061][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:43.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.065][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.067][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.081][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.092][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:43.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:43.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.096][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:43.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:43.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.112][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:43.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:43.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.127][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:43.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.198][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2023-02-22 01:24:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:43.240][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2023-02-22 01:24:43.242][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:43.244][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2023-02-22 01:24:43.246][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:43.248][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2023-02-22 01:24:43.250][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:43.272][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:43.273][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:43.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.293][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.297][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.308][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:43.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:43.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.313][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.324][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:43.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:43.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.328][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:43.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.343][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.359][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.370][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:43.371][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:43.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.374][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.376][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:43.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.380][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.395][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.406][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:43.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:43.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.411][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.422][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:43.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:43.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.426][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.437][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:43.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:43.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.441][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.523][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2023-02-22 01:24:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:43.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:43.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:43.602][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:43.604][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-22 01:24:43.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:43.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:43.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:43.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:43.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:43.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:43.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:43.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:43.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:44.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:44.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2023-02-22 01:24:44.465][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:44.468][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2023-02-22 01:24:44.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:44.477][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:44.479][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2023-02-22 01:24:44.480][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:44.483][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2023-02-22 01:24:44.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:44.503][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2023-02-22 01:24:44.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:44.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2023-02-22 01:24:44.508][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:44.511][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2023-02-22 01:24:44.513][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:44.535][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:44.537][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:44.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.557][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.562][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.573][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:44.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:44.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.577][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.589][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:44.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:44.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.593][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:44.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:44.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:44.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.609][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:44.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:44.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.624][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:44.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.636][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:44.637][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:44.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.640][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.661][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:44.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.665][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.681][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.693][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:44.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:44.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.697][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:44.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:44.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.713][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:44.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:44.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.730][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:44.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:44.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:44.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.804][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2023-02-22 01:24:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:44.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:44.874][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2023-02-22 01:24:44.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:44.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2023-02-22 01:24:44.879][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:44.882][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2023-02-22 01:24:44.884][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:44.916][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:44.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:44.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:44.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:44.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:44.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:44.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:44.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:44.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:44.937][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.941][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.952][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:44.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:44.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.956][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.967][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:44.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.972][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:44.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:44.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.987][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:44.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:44.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:44.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:44.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:45.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.002][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:45.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:45.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.018][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.020][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:45.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:45.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.024][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.040][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.051][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:45.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:45.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.056][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.067][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:45.069][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:45.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.072][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:45.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:45.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.088][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:45.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.171][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2023-02-22 01:24:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:45.251][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:45.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:45.255][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:45.256][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-22 01:24:45.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:45.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:45.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:45.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:45.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:45.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:45.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:45.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.008][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:46.012][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:46.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-22 01:24:46.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:46.018][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-22 01:24:46.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:46.755][biodb::testThat]
biodb.INFO [2023-02-22 01:24:46.757][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-02-22 01:24:46.758][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:46.760][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-22 01:24:46.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-22 01:24:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:46.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:46.889][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:46.891][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-22 01:24:46.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:46.894][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-22 01:24:46.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:46.935][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:46.937][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-22 01:24:46.939][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:46.941][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-22 01:24:46.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:46.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:46.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:46.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:46.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:46.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:46.981][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:46.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-22 01:24:46.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:46.986][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-22 01:24:46.989][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-22 01:24:46.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:46.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:46.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.028][private$selectFields]
biodb.TRACE[2023-02-22 01:24:47.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:47.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:47.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.038][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.043][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.046][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.051][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.053][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-02-22 01:24:47.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.113][private$selectFields]
biodb.TRACE[2023-02-22 01:24:47.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:47.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:47.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.122][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.128][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.130][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.136][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-22 01:24:47.157][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-02-22 01:24:47.158][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-22 01:24:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:47.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:47.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:47.356][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:47.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-02-22 01:24:47.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:47.362][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-02-22 01:24:47.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:47.370][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:47.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-02-22 01:24:47.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:47.376][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-02-22 01:24:47.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:47.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:47.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:47.521][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-22 01:24:47.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.583][private$selectFields]
biodb.TRACE[2023-02-22 01:24:47.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:47.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:47.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.592][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.597][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.605][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-02-22 01:24:47.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.710][private$selectFields]
biodb.TRACE[2023-02-22 01:24:47.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:47.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:47.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.720][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.725][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.741][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.747][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.748][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-22 01:24:47.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.796][private$selectFields]
biodb.TRACE[2023-02-22 01:24:47.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:47.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:47.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.805][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.810][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.813][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:47.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.818][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.820][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-02-22 01:24:47.839][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-02-22 01:24:47.841][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-22 01:24:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:47.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:47.869][biodb::testThat]
biodb.INFO [2023-02-22 01:24:47.870][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-02-22 01:24:47.871][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:47.873][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-22 01:24:47.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-22 01:24:47.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:47.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:47.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:47.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:47.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:47.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:47.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:47.986][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:47.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-22 01:24:47.990][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:47.991][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-22 01:24:47.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:47.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:47.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.028][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.032][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-22 01:24:48.036][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.038][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-22 01:24:48.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-22 01:24:48.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.094][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-22 01:24:48.098][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-22 01:24:48.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.129][private$selectFields]
biodb.TRACE[2023-02-22 01:24:48.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:48.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:48.133][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.138][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.144][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.146][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.152][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-02-22 01:24:48.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.202][private$selectFields]
biodb.TRACE[2023-02-22 01:24:48.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:48.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:48.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.211][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.217][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.220][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.225][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-22 01:24:48.247][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-02-22 01:24:48.248][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-22 01:24:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:48.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.376][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-02-22 01:24:48.380][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.382][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-02-22 01:24:48.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.390][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-02-22 01:24:48.394][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.396][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-02-22 01:24:48.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.499][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-22 01:24:48.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.529][private$selectFields]
biodb.TRACE[2023-02-22 01:24:48.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:48.532][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:48.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.548][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.554][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.557][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.562][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.564][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-02-22 01:24:48.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.612][private$selectFields]
biodb.TRACE[2023-02-22 01:24:48.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:48.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:48.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.621][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.626][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.634][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.636][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-22 01:24:48.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.683][private$selectFields]
biodb.TRACE[2023-02-22 01:24:48.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:48.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:48.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.693][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.698][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:48.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.706][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.707][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-02-22 01:24:48.727][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-02-22 01:24:48.728][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-22 01:24:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:48.746][biodb::testThat]
biodb.INFO [2023-02-22 01:24:48.747][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-02-22 01:24:48.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:48.750][biodb::testThat]
biodb.TRACE[2023-02-22 01:24:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-22 01:24:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-22 01:24:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:48.868][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.874][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-22 01:24:48.876][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.878][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-22 01:24:48.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.915][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.919][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-22 01:24:48.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.924][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-22 01:24:48.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:48.961][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:48.965][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:48.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-22 01:24:48.968][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:48.970][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-22 01:24:48.973][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-22 01:24:48.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:48.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:48.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:48.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:48.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:48.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:48.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.012][private$selectFields]
biodb.TRACE[2023-02-22 01:24:49.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:49.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:49.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.022][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.027][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.035][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.036][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-02-22 01:24:49.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.083][private$selectFields]
biodb.TRACE[2023-02-22 01:24:49.084][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:49.085][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:49.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.092][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.097][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.100][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.105][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-22 01:24:49.126][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-02-22 01:24:49.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-22 01:24:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:49.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:49.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:49.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:49.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-02-22 01:24:49.487][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:49.489][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-02-22 01:24:49.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:49.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:49.500][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-02-22 01:24:49.501][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:49.504][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-02-22 01:24:49.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:49.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:49.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:49.613][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-22 01:24:49.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.646][private$selectFields]
biodb.TRACE[2023-02-22 01:24:49.647][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:49.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:49.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.656][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.662][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.671][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.673][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-02-22 01:24:49.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.732][private$selectFields]
biodb.TRACE[2023-02-22 01:24:49.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:49.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:49.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.744][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.751][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.759][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.761][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:49.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-22 01:24:49.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:49.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:49.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:49.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:49.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:49.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:49.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.819][private$selectFields]
biodb.TRACE[2023-02-22 01:24:49.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-22 01:24:49.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-22 01:24:49.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.830][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.837][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.840][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-22 01:24:49.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.846][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-22 01:24:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:49.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-02-22 01:24:49.870][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-02-22 01:24:49.871][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-22 01:24:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-22 01:24:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:49.916][biodb::testThat]
biodb.INFO [2023-02-22 01:24:49.917][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2023-02-22 01:24:49.918][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:49.920][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:49.922][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2023-02-22 01:24:49.924][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:49.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2023-02-22 01:24:49.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:50.572][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2023-02-22 01:24:50.573][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:50.594][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:50.596][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:50.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:50.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:50.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:50.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:50.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:50.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:50.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:50.615][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.620][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.631][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:50.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:50.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.635][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.637][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:50.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:50.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.641][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:50.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:50.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.647][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:50.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.653][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:50.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:50.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.659][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.660][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:50.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:50.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.665][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.666][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:50.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:50.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.671][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.672][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:50.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:50.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.677][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.679][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:50.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:50.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.683][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:50.686][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:50.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.689][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:50.755][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2023-02-22 01:24:50.756][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2023-02-22 01:24:50.765][biodb::testThat]
biodb.INFO [2023-02-22 01:24:50.767][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2023-02-22 01:24:50.768][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:50.769][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:50.784][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2023-02-22 01:24:50.786][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2023-02-22 01:24:50.788][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2023-02-22 01:24:50.790][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2023-02-22 01:24:50.792][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-02-22 01:24:50.797][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2023-02-22 01:24:50.799][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:50.822][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2023-02-22 01:24:50.823][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:50.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:50.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:50.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:50.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:50.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:50.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:50.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:50.844][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.848][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.860][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:50.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:50.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.864][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.866][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:50.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:50.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.871][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:50.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:50.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.877][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:50.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:50.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.883][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:50.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:50.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.890][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.892][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:50.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:50.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.896][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:50.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:50.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.902][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.904][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:50.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:50.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.909][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.911][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:50.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:50.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.922][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:50.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:50.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.930][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:50.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:50.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:50.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:50.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:50.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:51.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:51.006][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.028][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.041][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:51.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:51.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.046][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.060][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:51.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:51.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.065][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:51.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:51.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:51.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.082][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.101][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.145][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.157][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:51.159][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:51.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.162][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.179][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.192][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:51.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:51.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.196][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.208][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:51.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:51.211][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.213][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:51.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:51.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:51.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.230][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:51.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:51.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:51.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:51.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:51.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:51.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:51.309][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.314][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.326][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:51.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:51.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.331][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.344][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:51.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:51.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.349][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:51.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:51.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.365][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.382][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.399][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.411][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:51.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:51.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.415][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.432][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.444][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:51.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:51.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.448][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.460][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:51.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:51.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.465][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:51.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:51.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.480][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:51.596][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2023-02-22 01:24:51.598][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2023-02-22 01:24:51.599][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2023-02-22 01:24:51.617][biodb::testThat]
biodb.INFO [2023-02-22 01:24:51.618][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2023-02-22 01:24:51.620][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:51.621][biodb::testThat]
biodb.INFO [2023-02-22 01:24:51.655][biodb::testThat]
biodb.INFO [2023-02-22 01:24:51.657][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2023-02-22 01:24:51.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:51.660][biodb::testThat]
biodb.INFO [2023-02-22 01:24:51.671][biodb::testThat]
biodb.INFO [2023-02-22 01:24:51.673][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2023-02-22 01:24:51.674][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:51.676][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:51.680][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:51.685][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:51.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2023-02-22 01:24:51.689][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:51.692][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2023-02-22 01:24:51.714][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:51.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:51.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.719][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:51.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:51.725][ef$get] fields variable is a list.
biodb.INFO [2023-02-22 01:24:51.727][biodb::testThat]
biodb.INFO [2023-02-22 01:24:51.728][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2023-02-22 01:24:51.730][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:51.731][biodb::testThat]
biodb.ERROR[2023-02-22 01:24:51.752][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2023-02-22 01:24:51.774][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2023-02-22 01:24:51.788][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-22 01:24:51.790][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-22 01:24:51.792][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-22 01:24:51.793][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-22 01:24:51.795][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:51.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:51.797][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:51.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:51.800][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-22 01:24:51.816][biodb::testContext]
biodb.INFO [2023-02-22 01:24:51.818][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:51.819][biodb::testContext] Test context - Test conversions
biodb.INFO [2023-02-22 01:24:51.820][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:51.822][biodb::testContext]
biodb.INFO [2023-02-22 01:24:51.829][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:51.831][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:51.836][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:51.838][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-22 01:24:51.839][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-22 01:24:51.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.845][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-22 01:24:51.847][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-22 01:24:51.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.852][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-22 01:24:51.854][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-22 01:24:51.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.860][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-22 01:24:51.861][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-22 01:24:51.863][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-22 01:24:51.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.868][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-22 01:24:51.870][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-22 01:24:51.871][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-22 01:24:51.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.877][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-22 01:24:51.879][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-22 01:24:51.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.885][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-22 01:24:51.886][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-22 01:24:51.888][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-22 01:24:51.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.894][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-22 01:24:51.896][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-22 01:24:51.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.901][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-22 01:24:51.903][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-22 01:24:51.905][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-22 01:24:51.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.911][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:51.912][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-22 01:24:51.914][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-22 01:24:51.916][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-22 01:24:51.917][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-22 01:24:51.919][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-22 01:24:51.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.925][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-22 01:24:51.927][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-22 01:24:51.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.933][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-22 01:24:51.935][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-22 01:24:51.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.941][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-22 01:24:51.942][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-22 01:24:51.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.948][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-22 01:24:51.950][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-22 01:24:51.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.956][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-22 01:24:51.958][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-22 01:24:51.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.964][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:51.965][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-22 01:24:51.970][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-22 01:24:51.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.975][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-22 01:24:51.977][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-22 01:24:51.979][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-22 01:24:51.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:51.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:51.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:51.984][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-22 01:24:51.987][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:51.989][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-22 01:24:51.990][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:51.992][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:51.993][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:51.995][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:51.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:51.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.000][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:52.001][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:52.003][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.005][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-22 01:24:52.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:52.008][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.019][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.021][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:52.021][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:52.021][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:52.021][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:52.021][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:52.022][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:52.024][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.026][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:52.028][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.029][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.031][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.032][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.034][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:52.035][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:52.037][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.038][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.040][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-22 01:24:52.043][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.044][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:52.046][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.048][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:52.049][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.051][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.052][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.054][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.055][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:52.056][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:52.058][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.059][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-22 01:24:52.061][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:52.062][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.064][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.065][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:52.065][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:52.065][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:52.065][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:52.065][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:52.067][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:52.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.071][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:52.072][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.077][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.078][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:52.079][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:52.081][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.082][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.084][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-22 01:24:52.086][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.088][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-22 01:24:52.089][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.091][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:52.092][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.094][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.095][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.096][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.098][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:52.099][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:52.101][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.102][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-22 01:24:52.104][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:52.105][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.107][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.108][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.110][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:52.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.112][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.114][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:52.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.118][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.119][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.121][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:52.122][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:52.123][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.125][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.126][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-22 01:24:52.129][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.130][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:52.132][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.133][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:52.135][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.136][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.138][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.139][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.141][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:52.142][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:52.143][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.145][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-22 01:24:52.146][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:52.148][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.149][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.151][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.152][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:52.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.155][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.156][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:52.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.159][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.160][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.162][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.163][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:52.164][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:52.166][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.167][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:52.169][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:52.170][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.282][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-22 01:24:52.284][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-22 01:24:52.286][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-22 01:24:52.288][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-22 01:24:52.290][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:52.292][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-22 01:24:52.294][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:52.296][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:52.298][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-22 01:24:52.300][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-22 01:24:52.302][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:52.304][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-22 01:24:52.306][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:52.308][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:52.310][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-22 01:24:52.312][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-22 01:24:52.314][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-22 01:24:52.316][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-22 01:24:52.318][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:52.320][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-22 01:24:52.322][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-22 01:24:52.324][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-22 01:24:52.326][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-22 01:24:52.328][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-22 01:24:52.330][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-22 01:24:52.332][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-22 01:24:52.334][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-22 01:24:52.336][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-22 01:24:52.338][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-22 01:24:52.340][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-22 01:24:52.342][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-22 01:24:52.344][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-22 01:24:52.346][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-22 01:24:52.348][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-22 01:24:52.350][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-22 01:24:52.352][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-22 01:24:52.354][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-22 01:24:52.356][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-22 01:24:52.358][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-22 01:24:52.360][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-22 01:24:52.362][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-22 01:24:52.364][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-22 01:24:52.366][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-22 01:24:52.368][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-22 01:24:52.370][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-22 01:24:52.372][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-22 01:24:52.374][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-22 01:24:52.376][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-22 01:24:52.378][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-22 01:24:52.380][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-22 01:24:52.382][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-22 01:24:52.384][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-22 01:24:52.386][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-22 01:24:52.388][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-22 01:24:52.390][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-22 01:24:52.392][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-22 01:24:52.394][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-22 01:24:52.396][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-22 01:24:52.398][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-22 01:24:52.400][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-22 01:24:52.402][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-22 01:24:52.404][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-22 01:24:52.406][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-22 01:24:52.408][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-22 01:24:52.410][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-22 01:24:52.412][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-22 01:24:52.414][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:52.416][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:52.418][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-22 01:24:52.420][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-22 01:24:52.422][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-22 01:24:52.424][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-22 01:24:52.426][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-22 01:24:52.428][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-22 01:24:52.430][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-22 01:24:52.432][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-22 01:24:52.434][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-22 01:24:52.436][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-22 01:24:52.438][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-22 01:24:52.440][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-22 01:24:52.450][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-22 01:24:52.452][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-22 01:24:52.454][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-22 01:24:52.456][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-22 01:24:52.458][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:52.459][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:52.460][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.463][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:52.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.613][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:52.617][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-22 01:24:52.620][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.623][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.625][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.626][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:52.628][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.629][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.631][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.632][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-22 01:24:52.634][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-22 01:24:52.635][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:52.636][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.638][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-22 01:24:52.639][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-22 01:24:52.640][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-22 01:24:52.642][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:52.644][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:52.644][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:52.644][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:52.645][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-22 01:24:52.646][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.649][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:52.650][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:52.651][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:52.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:52.654][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:52.654][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-22 01:24:52.656][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:52.657][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:52.658][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:52.660][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-22 01:24:52.660][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-22 01:24:52.661][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:52.664][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:52.666][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-22 01:24:52.668][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:52.670][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:52.672][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:52.677][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-22 01:24:52.679][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-22 01:24:52.680][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-22 01:24:52.682][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-22 01:24:52.684][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:52.685][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:52.688][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-22 01:24:52.690][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-22 01:24:52.692][biodb::testThat]
biodb.INFO [2023-02-22 01:24:52.693][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2023-02-22 01:24:52.694][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:52.696][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:52.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-22 01:24:52.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-22 01:24:52.709][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.711][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-22 01:24:52.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-02-22 01:24:52.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.746][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-02-22 01:24:52.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.768][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-02-22 01:24:52.772][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.774][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-02-22 01:24:52.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-02-22 01:24:52.837][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.839][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-02-22 01:24:52.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.869][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-02-22 01:24:52.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.875][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-02-22 01:24:52.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-02-22 01:24:52.917][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.919][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-02-22 01:24:52.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-02-22 01:24:52.945][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.947][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-02-22 01:24:52.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:52.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:52.969][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:52.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2023-02-22 01:24:52.972][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:52.975][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2023-02-22 01:24:52.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:52.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:52.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:52.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:52.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:52.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:52.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-22 01:24:52.995][biodb::testThat]
biodb.INFO [2023-02-22 01:24:52.996][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2023-02-22 01:24:52.998][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:52.999][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:53.003][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:53.008][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:53.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2023-02-22 01:24:53.011][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:53.014][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2023-02-22 01:24:53.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:53.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:53.039][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:53.040][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2023-02-22 01:24:53.042][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:53.044][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2023-02-22 01:24:53.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:53.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-22 01:24:53.064][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-22 01:24:53.065][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-22 01:24:53.067][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-22 01:24:53.068][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-22 01:24:53.069][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.071][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.074][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-22 01:24:53.080][biodb::testContext]
biodb.INFO [2023-02-22 01:24:53.081][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:53.082][biodb::testContext] Test context - Test web services
biodb.INFO [2023-02-22 01:24:53.084][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:53.085][biodb::testContext]
biodb.INFO [2023-02-22 01:24:53.091][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:53.093][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:53.098][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:53.099][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-22 01:24:53.101][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.106][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-22 01:24:53.107][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.112][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-22 01:24:53.113][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.118][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-22 01:24:53.120][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-22 01:24:53.121][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-22 01:24:53.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.126][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-22 01:24:53.127][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-22 01:24:53.129][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.134][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-22 01:24:53.135][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-22 01:24:53.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.140][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-22 01:24:53.142][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-22 01:24:53.143][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-22 01:24:53.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.148][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-22 01:24:53.149][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.154][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-22 01:24:53.156][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-22 01:24:53.157][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.162][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:53.163][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-22 01:24:53.165][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-22 01:24:53.166][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-22 01:24:53.167][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-22 01:24:53.169][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-22 01:24:53.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.174][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-22 01:24:53.175][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-22 01:24:53.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.180][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-22 01:24:53.182][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-22 01:24:53.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.187][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-22 01:24:53.188][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-22 01:24:53.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.193][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-22 01:24:53.194][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-22 01:24:53.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.199][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-22 01:24:53.201][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-22 01:24:53.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.206][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:53.207][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-22 01:24:53.211][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-22 01:24:53.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.216][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-22 01:24:53.218][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-22 01:24:53.219][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-22 01:24:53.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.224][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-22 01:24:53.227][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.228][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-22 01:24:53.229][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.231][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:53.232][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.233][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.235][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.236][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.237][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:53.239][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:53.240][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.242][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-22 01:24:53.243][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:53.244][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.246][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.247][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:53.247][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:53.247][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:53.247][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:53.247][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:53.248][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:53.250][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.251][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.252][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:53.254][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.256][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.257][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.259][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:53.260][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:53.261][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.263][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.264][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-22 01:24:53.267][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.268][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:53.269][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.271][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:53.272][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.274][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.275][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.276][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.278][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:53.279][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:53.280][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.282][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-22 01:24:53.283][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:53.284][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.294][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.296][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:53.296][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:53.296][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:53.296][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:53.296][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:53.297][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:53.298][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.300][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.301][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:53.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.304][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.306][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.307][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:53.308][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:53.309][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.311][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.312][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-22 01:24:53.315][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.316][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-22 01:24:53.317][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.319][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:53.320][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.321][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.323][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.325][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:53.327][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:53.328][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.329][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-22 01:24:53.331][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:53.332][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.333][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.334][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:53.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.338][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.339][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:53.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.344][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.346][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:53.347][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:53.348][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.349][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.351][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-22 01:24:53.353][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.355][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:53.356][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.357][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:53.359][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.360][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.361][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.362][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.364][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:53.365][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:53.366][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.368][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-22 01:24:53.369][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:53.370][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.372][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.373][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.374][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:53.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.378][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:53.379][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.382][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.383][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.384][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:53.385][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:53.386][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.388][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:53.390][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:53.391][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.495][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-22 01:24:53.497][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-22 01:24:53.499][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-22 01:24:53.500][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-22 01:24:53.502][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:53.504][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-22 01:24:53.506][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:53.508][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:53.510][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-22 01:24:53.512][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-22 01:24:53.514][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:53.516][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-22 01:24:53.518][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:53.520][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:53.522][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-22 01:24:53.523][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-22 01:24:53.525][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-22 01:24:53.527][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-22 01:24:53.529][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:53.531][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-22 01:24:53.533][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-22 01:24:53.535][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-22 01:24:53.537][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-22 01:24:53.539][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-22 01:24:53.541][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-22 01:24:53.543][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-22 01:24:53.545][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-22 01:24:53.547][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-22 01:24:53.549][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-22 01:24:53.551][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-22 01:24:53.553][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-22 01:24:53.555][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-22 01:24:53.557][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-22 01:24:53.559][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-22 01:24:53.561][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-22 01:24:53.563][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-22 01:24:53.565][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-22 01:24:53.567][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-22 01:24:53.569][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-22 01:24:53.570][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-22 01:24:53.572][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-22 01:24:53.574][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-22 01:24:53.576][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-22 01:24:53.578][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-22 01:24:53.580][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-22 01:24:53.582][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-22 01:24:53.584][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-22 01:24:53.586][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-22 01:24:53.588][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-22 01:24:53.590][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-22 01:24:53.592][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-22 01:24:53.594][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-22 01:24:53.596][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-22 01:24:53.598][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-22 01:24:53.600][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-22 01:24:53.602][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-22 01:24:53.604][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-22 01:24:53.606][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-22 01:24:53.608][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-22 01:24:53.610][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-22 01:24:53.612][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-22 01:24:53.614][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-22 01:24:53.615][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-22 01:24:53.617][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-22 01:24:53.619][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-22 01:24:53.621][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-22 01:24:53.623][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:53.625][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:53.627][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-22 01:24:53.629][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-22 01:24:53.631][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-22 01:24:53.633][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-22 01:24:53.635][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-22 01:24:53.637][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-22 01:24:53.639][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-22 01:24:53.641][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-22 01:24:53.643][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-22 01:24:53.645][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-22 01:24:53.647][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-22 01:24:53.649][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-22 01:24:53.651][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-22 01:24:53.653][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-22 01:24:53.655][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-22 01:24:53.657][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-22 01:24:53.659][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:53.660][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:53.661][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.664][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.824][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:53.826][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-22 01:24:53.828][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.830][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.833][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:53.834][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.835][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.837][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.838][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-22 01:24:53.840][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-22 01:24:53.841][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:53.843][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.844][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-22 01:24:53.845][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-22 01:24:53.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-22 01:24:53.848][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:53.850][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:53.850][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:53.850][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:53.851][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-22 01:24:53.853][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.854][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.855][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:53.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:53.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:53.859][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:53.861][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:53.861][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-22 01:24:53.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:53.863][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:53.865][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:53.866][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-22 01:24:53.866][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-22 01:24:53.868][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:53.870][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:53.873][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-22 01:24:53.875][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:53.877][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:53.879][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:53.884][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-22 01:24:53.885][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-22 01:24:53.887][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-22 01:24:53.889][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-22 01:24:53.891][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:53.892][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:53.894][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-22 01:24:53.895][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-22 01:24:53.897][biodb::testThat]
biodb.INFO [2023-02-22 01:24:53.898][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2023-02-22 01:24:53.900][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:53.901][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:53.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-22 01:24:53.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:53.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-22 01:24:53.914][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:53.916][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-22 01:24:53.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:53.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:53.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-02-22 01:24:53.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:53.931][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2023-02-22 01:24:53.937][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-22 01:24:53.938][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-22 01:24:53.940][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-22 01:24:53.941][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-22 01:24:53.942][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:53.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:53.945][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:53.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:53.947][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-22 01:24:53.954][biodb::testContext]
biodb.INFO [2023-02-22 01:24:53.955][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:53.956][biodb::testContext] Test context - Non regression tests
biodb.INFO [2023-02-22 01:24:53.958][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-22 01:24:53.959][biodb::testContext]
biodb.INFO [2023-02-22 01:24:53.965][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:53.968][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:53.972][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:53.974][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-22 01:24:53.975][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.980][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-22 01:24:53.982][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.987][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-22 01:24:53.988][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-22 01:24:53.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:53.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:53.993][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-22 01:24:53.994][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-22 01:24:53.996][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-22 01:24:53.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:53.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.001][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-22 01:24:54.003][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-22 01:24:54.005][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-22 01:24:54.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.010][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-22 01:24:54.012][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-22 01:24:54.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.017][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-22 01:24:54.018][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-22 01:24:54.020][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-22 01:24:54.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.025][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-22 01:24:54.026][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-22 01:24:54.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.032][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-22 01:24:54.033][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-22 01:24:54.035][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-22 01:24:54.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.040][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:54.041][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-22 01:24:54.043][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-22 01:24:54.044][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-22 01:24:54.046][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-22 01:24:54.047][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-22 01:24:54.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.052][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-22 01:24:54.054][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-22 01:24:54.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.059][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-22 01:24:54.060][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-22 01:24:54.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.066][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-22 01:24:54.067][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-22 01:24:54.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.072][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-22 01:24:54.074][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-22 01:24:54.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.079][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-22 01:24:54.080][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-22 01:24:54.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.086][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-22 01:24:54.087][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-22 01:24:54.091][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-22 01:24:54.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.097][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-22 01:24:54.098][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-22 01:24:54.100][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-22 01:24:54.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.105][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-22 01:24:54.108][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.109][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-22 01:24:54.110][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.112][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:54.113][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.116][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.126][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.127][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:54.129][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:54.130][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.131][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-22 01:24:54.133][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:54.134][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.136][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.137][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:54.137][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:54.137][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:54.137][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:54.137][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:54.138][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:54.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:54.144][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.145][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.146][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.148][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.149][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:54.150][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:54.152][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.153][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.155][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-22 01:24:54.157][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.158][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:54.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:54.163][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.164][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.165][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.167][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.168][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:54.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:54.171][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.172][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-22 01:24:54.174][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:54.175][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.176][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.178][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:54.178][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:54.178][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:54.178][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-22 01:24:54.178][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-22 01:24:54.179][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:54.181][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.182][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.183][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:54.184][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.186][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.187][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.188][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.190][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:54.191][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:54.192][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.194][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.195][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-22 01:24:54.198][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.199][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-22 01:24:54.200][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.202][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:54.203][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.204][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.206][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.207][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.209][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-22 01:24:54.210][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:54.211][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.213][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-22 01:24:54.214][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:54.216][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.217][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.218][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.220][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:54.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.222][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.224][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:54.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.228][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.229][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.230][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:54.231][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:54.233][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.234][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.236][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-22 01:24:54.238][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.240][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-22 01:24:54.241][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.242][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:54.244][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.245][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.247][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.248][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.249][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-22 01:24:54.251][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:54.252][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.253][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-22 01:24:54.255][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:54.256][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.258][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.259][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.260][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-22 01:24:54.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.264][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:54.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.268][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.270][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.271][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:54.272][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:54.274][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.275][self$setPropertyValue]
biodb.DEBUG[2023-02-22 01:24:54.277][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:54.278][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.387][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-22 01:24:54.389][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-22 01:24:54.391][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-22 01:24:54.393][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-22 01:24:54.395][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:54.397][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-22 01:24:54.399][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:54.400][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:54.402][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-22 01:24:54.404][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-22 01:24:54.406][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:54.408][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-22 01:24:54.410][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-22 01:24:54.412][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-22 01:24:54.414][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-22 01:24:54.416][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-22 01:24:54.418][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-22 01:24:54.420][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-22 01:24:54.422][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:54.424][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-22 01:24:54.426][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-22 01:24:54.428][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-22 01:24:54.429][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-22 01:24:54.431][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-22 01:24:54.433][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-22 01:24:54.435][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-22 01:24:54.437][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-22 01:24:54.439][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-22 01:24:54.441][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-22 01:24:54.443][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-22 01:24:54.445][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-22 01:24:54.447][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-22 01:24:54.449][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-22 01:24:54.451][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-22 01:24:54.453][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-22 01:24:54.455][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-22 01:24:54.457][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-22 01:24:54.458][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-22 01:24:54.460][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-22 01:24:54.462][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-22 01:24:54.464][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-22 01:24:54.466][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-22 01:24:54.468][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-22 01:24:54.470][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-22 01:24:54.472][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-22 01:24:54.474][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-22 01:24:54.476][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-22 01:24:54.478][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-22 01:24:54.480][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-22 01:24:54.482][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-22 01:24:54.484][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-22 01:24:54.486][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-22 01:24:54.488][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-22 01:24:54.490][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-22 01:24:54.492][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-22 01:24:54.493][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-22 01:24:54.495][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-22 01:24:54.497][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-22 01:24:54.499][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-22 01:24:54.501][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-22 01:24:54.503][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-22 01:24:54.505][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-22 01:24:54.507][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-22 01:24:54.509][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-22 01:24:54.511][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-22 01:24:54.513][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-22 01:24:54.515][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:54.517][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:54.519][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-22 01:24:54.520][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-22 01:24:54.530][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-22 01:24:54.533][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-22 01:24:54.535][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-22 01:24:54.537][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-22 01:24:54.538][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-22 01:24:54.540][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-22 01:24:54.542][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-22 01:24:54.544][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-22 01:24:54.546][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-22 01:24:54.548][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-22 01:24:54.550][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-22 01:24:54.552][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-22 01:24:54.554][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-22 01:24:54.556][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-22 01:24:54.558][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-22 01:24:54.559][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-22 01:24:54.560][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.563][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-22 01:24:54.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-22 01:24:54.708][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-22 01:24:54.710][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-22 01:24:54.712][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.714][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.715][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.716][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-22 01:24:54.718][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.719][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.720][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.722][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-22 01:24:54.723][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-22 01:24:54.724][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-22 01:24:54.726][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.727][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-22 01:24:54.728][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-22 01:24:54.730][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-22 01:24:54.731][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-22 01:24:54.732][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-22 01:24:54.732][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-22 01:24:54.732][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-22 01:24:54.734][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-22 01:24:54.735][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.738][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-22 01:24:54.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-22 01:24:54.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-22 01:24:54.742][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-22 01:24:54.743][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-22 01:24:54.743][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-22 01:24:54.744][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-22 01:24:54.745][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-22 01:24:54.747][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-22 01:24:54.748][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-22 01:24:54.748][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-22 01:24:54.750][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-22 01:24:54.752][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-22 01:24:54.754][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-22 01:24:54.756][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-22 01:24:54.758][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-22 01:24:54.760][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-22 01:24:54.765][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-22 01:24:54.766][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-22 01:24:54.768][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-22 01:24:54.770][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-22 01:24:54.771][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:54.773][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-22 01:24:54.774][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-22 01:24:54.776][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-22 01:24:54.777][biodb::testThat]
biodb.INFO [2023-02-22 01:24:54.779][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2023-02-22 01:24:54.780][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-22 01:24:54.781][biodb::testThat]
biodb.DEBUG[2023-02-22 01:24:54.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-22 01:24:54.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:54.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-22 01:24:54.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:54.796][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-22 01:24:54.800][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-22 01:24:54.804][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-22 01:24:54.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-02-22 01:24:54.808][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:54.809][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2023-02-22 01:24:54.830][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2023-02-22 01:24:54.831][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-22 01:24:54.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2023-02-22 01:24:54.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-22 01:24:54.838][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2023-02-22 01:24:54.840][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-22 01:24:54.859][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-22 01:24:54.861][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-22 01:24:54.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-22 01:24:54.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:54.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:54.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:54.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:54.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:54.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-22 01:24:54.881][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:54.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:54.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.885][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.896][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:54.897][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:54.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.900][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-22 01:24:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-22 01:24:54.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.911][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:54.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:54.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.915][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-22 01:24:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-22 01:24:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-22 01:24:54.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-22 01:24:54.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.939][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-22 01:24:54.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-22 01:24:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.944][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:54.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.950][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-22 01:24:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.961][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:54.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:54.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.965][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-22 01:24:54.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-22 01:24:54.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:54.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:54.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.980][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-22 01:24:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.991][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:54.992][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:54.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:54.995][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-22 01:24:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-22 01:24:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.006][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:55.008][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:55.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.010][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-22 01:24:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-22 01:24:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:55.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:55.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.025][ef$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-22 01:24:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-22 01:24:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:55.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-22 01:24:55.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-22 01:24:55.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-22 01:24:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-22 01:24:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-22 01:24:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-22 01:24:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-22 01:24:55.094][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2023-02-22 01:24:55.096][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-22 01:24:55.098][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-22 01:24:55.099][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-22 01:24:55.101][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-22 01:24:55.102][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-22 01:24:55.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-22 01:24:55.104][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-22 01:24:55.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-22 01:24:55.107][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-22 01:24:55.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 348 ]
>
> proc.time()
user system elapsed
24.979 1.243 43.069
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 2.949 | 0.165 | 4.930 | |
| ChebiEntry | 0.502 | 0.009 | 0.549 | |