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This page was generated on 2023-02-23 01:34:15 -0000 (Thu, 23 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4245 |
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To the developers/maintainers of the nullranges package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1358/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
nullranges 1.5.15 (landing page) Michael Love
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: nullranges |
Version: 1.5.15 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz |
StartedAt: 2023-02-22 09:18:42 -0000 (Wed, 22 Feb 2023) |
EndedAt: 2023-02-22 09:28:37 -0000 (Wed, 22 Feb 2023) |
EllapsedTime: 594.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: nullranges.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/nullranges.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘nullranges/DESCRIPTION’ ... OK * this is package ‘nullranges’ version ‘1.5.15’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nullranges’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘bootRanges.Rmd’ using ‘UTF-8’... OK ‘matchRanges.Rmd’ using ‘UTF-8’... OK ‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK ‘matching_granges.Rmd’ using ‘UTF-8’... OK ‘matching_pool_set.Rmd’ using ‘UTF-8’... OK ‘nullranges.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(nullranges) > > test_check("nullranges") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ] > > proc.time() user system elapsed 20.653 1.145 21.773
nullranges.Rcheck/nullranges-Ex.timings
name | user | system | elapsed | |
MatchedDataFrame | 2.316 | 0.055 | 2.357 | |
MatchedGInteractions | 0.699 | 0.025 | 0.714 | |
MatchedGRanges | 0.595 | 0.000 | 0.589 | |
bootRanges | 0.425 | 0.004 | 0.429 | |
combnCov | 0.004 | 0.001 | 0.005 | |
covariates | 0.152 | 0.000 | 0.149 | |
focal | 0.188 | 0.000 | 0.186 | |
indices | 0.197 | 0.004 | 0.197 | |
makeExampleMatchedDataSet | 2.023 | 0.064 | 2.073 | |
matchRanges | 1.540 | 0.012 | 1.510 | |
matched | 0.188 | 0.000 | 0.184 | |
matchedClass | 0.166 | 0.000 | 0.162 | |
matchedData | 0.151 | 0.000 | 0.148 | |
method | 0.175 | 0.000 | 0.172 | |
oneRegionSegment | 0.425 | 0.079 | 0.905 | |
overview | 0.202 | 0.013 | 0.211 | |
plotCovariate | 3.286 | 0.112 | 3.390 | |
plotPropensity | 2.051 | 0.140 | 2.185 | |
plotSegment | 2.211 | 0.148 | 2.360 | |
pool | 0.162 | 0.008 | 0.167 | |
reduceSegment | 0.293 | 0.016 | 0.309 | |
segmentDensity | 0.675 | 0.036 | 0.712 | |
unmatched | 0.157 | 0.000 | 0.154 | |
withReplacement | 0.203 | 0.008 | 0.208 | |