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This page was generated on 2023-02-23 01:34:15 -0000 (Thu, 23 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4245
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CHECK results for nullranges on kunpeng1


To the developers/maintainers of the nullranges package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1358/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nullranges 1.5.15  (landing page)
Michael Love
Snapshot Date: 2023-02-21 12:29:53 -0000 (Tue, 21 Feb 2023)
git_url: https://git.bioconductor.org/packages/nullranges
git_branch: master
git_last_commit: 9f28dee
git_last_commit_date: 2023-02-08 21:00:48 -0000 (Wed, 08 Feb 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: nullranges
Version: 1.5.15
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz
StartedAt: 2023-02-22 09:18:42 -0000 (Wed, 22 Feb 2023)
EndedAt: 2023-02-22 09:28:37 -0000 (Wed, 22 Feb 2023)
EllapsedTime: 594.9 seconds
RetCode: 0
Status:   OK  
CheckDir: nullranges.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/nullranges.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.5.15’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘bootRanges.Rmd’ using ‘UTF-8’... OK
  ‘matchRanges.Rmd’ using ‘UTF-8’... OK
  ‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK
  ‘matching_granges.Rmd’ using ‘UTF-8’... OK
  ‘matching_pool_set.Rmd’ using ‘UTF-8’... OK
  ‘nullranges.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

nullranges.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL nullranges
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘nullranges’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nullranges)

Tests output

nullranges.Rcheck/tests/testthat.Rout


R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(nullranges)
> 
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
 20.653   1.145  21.773 

Example timings

nullranges.Rcheck/nullranges-Ex.timings

nameusersystemelapsed
MatchedDataFrame2.3160.0552.357
MatchedGInteractions0.6990.0250.714
MatchedGRanges0.5950.0000.589
bootRanges0.4250.0040.429
combnCov0.0040.0010.005
covariates0.1520.0000.149
focal0.1880.0000.186
indices0.1970.0040.197
makeExampleMatchedDataSet2.0230.0642.073
matchRanges1.5400.0121.510
matched0.1880.0000.184
matchedClass0.1660.0000.162
matchedData0.1510.0000.148
method0.1750.0000.172
oneRegionSegment0.4250.0790.905
overview0.2020.0130.211
plotCovariate3.2860.1123.390
plotPropensity2.0510.1402.185
plotSegment2.2110.1482.360
pool0.1620.0080.167
reduceSegment0.2930.0160.309
segmentDensity0.6750.0360.712
unmatched0.1570.0000.154
withReplacement0.2030.0080.208