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This page was generated on 2023-02-27 02:34:32 -0000 (Mon, 27 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4259
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BUILD results for COSNet on kunpeng1


To the developers/maintainers of the COSNet package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COSNet.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 418/2169HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COSNet 1.33.0  (landing page)
Marco Frasca
Snapshot Date: 2023-02-23 09:40:21 -0000 (Thu, 23 Feb 2023)
git_url: https://git.bioconductor.org/packages/COSNet
git_branch: master
git_last_commit: f37bf87
git_last_commit_date: 2022-11-01 15:10:43 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: COSNet
Version: 1.33.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COSNet
StartedAt: 2023-02-23 14:52:11 -0000 (Thu, 23 Feb 2023)
EndedAt: 2023-02-23 15:53:13 -0000 (Thu, 23 Feb 2023)
EllapsedTime: 3662.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COSNet
###
##############################################################################
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* checking for file ‘COSNet/DESCRIPTION’ ... OK
* preparing ‘COSNet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘COSNet_v.Rnw’ using Sweave
Loading required package: limma
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following object is masked from ‘package:limma’:

    plotMA

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: RBGL
PerfMeas: Performance Measures for ranking and classification tasks.

Warning in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :
  URL 'https://frasca.di.unimi.it/cosnetdata/u.sum.fly.txt': Timeout of 3600 seconds was reached

Error: processing vignette 'COSNet_v.Rnw' failed with diagnostics:
 chunk 8 (label = a8) 
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  : 
  cannot read from connection

--- failed re-building ‘COSNet_v.Rnw’

SUMMARY: processing the following file failed:
  ‘COSNet_v.Rnw’

Error: Vignette re-building failed.
Execution halted