| Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-02-27 02:34:35 -0000 (Mon, 27 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 914/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz |
| StartedAt: 2023-02-24 12:35:34 -0000 (Fri, 24 Feb 2023) |
| EndedAt: 2023-02-24 12:51:45 -0000 (Fri, 24 Feb 2023) |
| EllapsedTime: 970.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 38.415 0.692 39.108
corr_plot 38.216 0.415 38.638
FSmethod 37.915 0.548 38.475
pred_ensembel 18.420 0.517 16.636
getFASTA 0.721 0.024 9.702
enrichfindP 0.407 0.057 15.516
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 95.106056
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.863277
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 97.858079
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.672524
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 100.899952
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 95.272685
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 95.107353
final value 93.582418
converged
Fitting Repeat 3
# weights: 305
initial value 124.748809
iter 10 value 93.353684
iter 20 value 93.301806
final value 93.301233
converged
Fitting Repeat 4
# weights: 305
initial value 107.913504
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 105.801093
final value 93.582418
converged
Fitting Repeat 1
# weights: 507
initial value 95.518421
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 104.991632
final value 93.582418
converged
Fitting Repeat 3
# weights: 507
initial value 109.015821
final value 93.582418
converged
Fitting Repeat 4
# weights: 507
initial value 110.950097
iter 10 value 93.582423
final value 93.582418
converged
Fitting Repeat 5
# weights: 507
initial value 96.914877
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 102.635982
iter 10 value 87.781512
iter 20 value 83.204306
iter 30 value 82.953612
iter 40 value 82.271983
iter 50 value 82.192194
iter 60 value 82.170883
iter 70 value 82.148930
iter 70 value 82.148930
iter 70 value 82.148930
final value 82.148930
converged
Fitting Repeat 2
# weights: 103
initial value 104.000246
iter 10 value 94.017945
iter 20 value 87.631563
iter 30 value 85.720360
iter 40 value 83.607638
iter 50 value 81.529292
iter 60 value 81.180997
iter 70 value 80.622386
iter 80 value 80.458249
iter 90 value 80.373732
iter 100 value 80.326536
final value 80.326536
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 105.177917
iter 10 value 94.055127
iter 20 value 94.054596
iter 30 value 93.581638
iter 40 value 86.095994
iter 50 value 82.173300
iter 60 value 82.064797
iter 70 value 81.587932
iter 80 value 80.376222
iter 90 value 80.226587
iter 100 value 80.213654
final value 80.213654
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.386557
iter 10 value 91.076340
iter 20 value 85.599114
iter 30 value 83.100849
iter 40 value 82.012857
iter 50 value 81.951349
iter 60 value 81.907919
final value 81.907881
converged
Fitting Repeat 5
# weights: 103
initial value 101.042181
iter 10 value 92.951826
iter 20 value 83.960745
iter 30 value 82.853294
iter 40 value 81.994843
iter 50 value 81.957444
iter 60 value 81.913306
iter 70 value 81.909034
final value 81.907881
converged
Fitting Repeat 1
# weights: 305
initial value 111.008242
iter 10 value 94.051236
iter 20 value 83.725844
iter 30 value 82.923623
iter 40 value 82.135409
iter 50 value 81.139078
iter 60 value 80.143197
iter 70 value 79.517460
iter 80 value 79.121815
iter 90 value 79.011210
iter 100 value 79.003988
final value 79.003988
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.756585
iter 10 value 94.055172
iter 20 value 93.714639
iter 30 value 84.190895
iter 40 value 83.886904
iter 50 value 83.136652
iter 60 value 82.108828
iter 70 value 81.969178
iter 80 value 81.684490
iter 90 value 80.930848
iter 100 value 79.763116
final value 79.763116
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.461459
iter 10 value 94.008368
iter 20 value 93.470656
iter 30 value 93.284597
iter 40 value 88.916556
iter 50 value 83.778046
iter 60 value 81.394303
iter 70 value 81.073677
iter 80 value 80.507337
iter 90 value 79.551167
iter 100 value 79.039968
final value 79.039968
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.655450
iter 10 value 93.971822
iter 20 value 93.539279
iter 30 value 93.498273
iter 40 value 93.075038
iter 50 value 85.681366
iter 60 value 82.945921
iter 70 value 82.203868
iter 80 value 80.918053
iter 90 value 80.409614
iter 100 value 79.847359
final value 79.847359
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.090512
iter 10 value 93.543256
iter 20 value 91.956001
iter 30 value 84.846924
iter 40 value 81.767837
iter 50 value 80.239363
iter 60 value 78.674230
iter 70 value 78.362853
iter 80 value 78.259142
iter 90 value 78.230268
iter 100 value 78.214196
final value 78.214196
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 137.166889
iter 10 value 95.625874
iter 20 value 93.558083
iter 30 value 93.044353
iter 40 value 85.861150
iter 50 value 82.124663
iter 60 value 81.421761
iter 70 value 80.576088
iter 80 value 80.016840
iter 90 value 79.688713
iter 100 value 79.421041
final value 79.421041
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.238034
iter 10 value 89.649857
iter 20 value 84.475455
iter 30 value 79.932730
iter 40 value 79.068586
iter 50 value 78.636269
iter 60 value 78.375928
iter 70 value 78.348987
iter 80 value 78.239639
iter 90 value 78.221719
iter 100 value 78.166131
final value 78.166131
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 135.879229
iter 10 value 94.610781
iter 20 value 87.276398
iter 30 value 86.786766
iter 40 value 83.271088
iter 50 value 82.902107
iter 60 value 82.844255
iter 70 value 80.709736
iter 80 value 80.360640
iter 90 value 79.407312
iter 100 value 79.322318
final value 79.322318
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.358105
iter 10 value 95.195825
iter 20 value 91.139999
iter 30 value 86.042196
iter 40 value 82.925420
iter 50 value 82.201501
iter 60 value 81.847776
iter 70 value 81.078677
iter 80 value 80.027641
iter 90 value 79.787197
iter 100 value 79.624571
final value 79.624571
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.954480
iter 10 value 92.968885
iter 20 value 84.946855
iter 30 value 82.006327
iter 40 value 81.766107
iter 50 value 81.106437
iter 60 value 80.785153
iter 70 value 80.529347
iter 80 value 80.296989
iter 90 value 79.967678
iter 100 value 79.251914
final value 79.251914
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.600815
iter 10 value 94.054535
iter 20 value 93.380657
iter 30 value 86.821543
iter 40 value 86.377044
final value 86.367518
converged
Fitting Repeat 2
# weights: 103
initial value 99.603904
final value 94.054639
converged
Fitting Repeat 3
# weights: 103
initial value 97.506550
final value 94.054548
converged
Fitting Repeat 4
# weights: 103
initial value 97.996553
iter 10 value 94.054492
final value 94.052964
converged
Fitting Repeat 5
# weights: 103
initial value 95.463900
final value 94.055456
converged
Fitting Repeat 1
# weights: 305
initial value 102.181220
iter 10 value 90.343761
iter 20 value 90.342145
iter 30 value 90.340702
iter 40 value 90.340203
iter 50 value 90.339348
iter 60 value 90.113227
iter 70 value 90.049296
iter 80 value 90.048668
iter 90 value 90.048496
iter 100 value 90.047946
final value 90.047946
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.182491
iter 10 value 87.700637
iter 20 value 83.808185
iter 30 value 82.714214
iter 40 value 82.698851
iter 50 value 82.697633
iter 60 value 80.666972
iter 70 value 80.404975
iter 80 value 79.844556
iter 90 value 79.806334
iter 100 value 79.730010
final value 79.730010
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.857253
iter 10 value 94.058068
iter 20 value 94.053155
iter 30 value 93.630280
iter 40 value 82.879370
iter 50 value 82.072388
iter 60 value 82.071747
iter 70 value 82.071110
final value 82.070854
converged
Fitting Repeat 4
# weights: 305
initial value 99.073441
iter 10 value 93.308990
iter 20 value 93.300411
iter 30 value 91.132469
iter 40 value 90.438881
iter 50 value 90.438344
iter 60 value 88.409211
iter 70 value 86.075354
iter 80 value 82.207138
iter 90 value 82.149501
iter 100 value 82.147640
final value 82.147640
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 127.558383
iter 10 value 93.588586
iter 20 value 93.584464
iter 30 value 87.702110
iter 40 value 84.235869
iter 50 value 84.191786
iter 60 value 84.190840
final value 84.190408
converged
Fitting Repeat 1
# weights: 507
initial value 106.585976
iter 10 value 93.385876
iter 20 value 93.330978
iter 30 value 93.302025
final value 93.301964
converged
Fitting Repeat 2
# weights: 507
initial value 129.125650
iter 10 value 94.060253
iter 20 value 92.705824
iter 30 value 83.173478
iter 40 value 80.337591
iter 50 value 79.434721
iter 60 value 79.395122
final value 79.394098
converged
Fitting Repeat 3
# weights: 507
initial value 122.590091
iter 10 value 94.061494
iter 20 value 94.052952
iter 30 value 85.753290
iter 40 value 85.412131
iter 50 value 84.823946
iter 60 value 83.855385
iter 70 value 83.853132
iter 80 value 83.013975
iter 90 value 82.037287
iter 100 value 81.640351
final value 81.640351
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.330901
iter 10 value 90.514794
iter 20 value 90.000525
iter 30 value 86.121286
iter 40 value 85.617702
iter 50 value 85.187935
iter 60 value 85.110103
iter 70 value 85.108479
iter 80 value 85.095824
iter 90 value 81.814326
iter 100 value 80.987801
final value 80.987801
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.591164
iter 10 value 93.463584
iter 20 value 93.430468
iter 30 value 93.342807
iter 40 value 82.307277
iter 50 value 81.652122
iter 60 value 81.247993
iter 70 value 81.236771
iter 80 value 80.985415
final value 80.985404
converged
Fitting Repeat 1
# weights: 103
initial value 94.309572
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 94.470848
iter 10 value 93.728134
final value 93.714286
converged
Fitting Repeat 3
# weights: 103
initial value 96.127233
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.521245
final value 94.008696
converged
Fitting Repeat 5
# weights: 103
initial value 98.787212
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 117.167920
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 97.727776
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 91.096934
iter 10 value 84.838644
iter 20 value 81.086030
iter 30 value 79.151199
iter 40 value 79.082810
final value 79.080232
converged
Fitting Repeat 4
# weights: 305
initial value 94.725371
final value 93.944596
converged
Fitting Repeat 5
# weights: 305
initial value 96.866453
iter 10 value 93.722226
final value 93.722224
converged
Fitting Repeat 1
# weights: 507
initial value 100.605160
final value 93.671509
converged
Fitting Repeat 2
# weights: 507
initial value 101.079632
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 95.694654
iter 10 value 89.574308
iter 20 value 83.781393
iter 30 value 82.075941
iter 40 value 81.984381
final value 81.984066
converged
Fitting Repeat 4
# weights: 507
initial value 106.047144
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 95.931431
final value 94.052911
converged
Fitting Repeat 1
# weights: 103
initial value 97.231658
iter 10 value 93.869139
iter 20 value 88.922317
iter 30 value 84.194474
iter 40 value 83.859084
iter 50 value 79.973688
iter 60 value 79.661345
iter 70 value 79.628760
iter 80 value 79.394149
iter 90 value 79.206324
final value 79.205831
converged
Fitting Repeat 2
# weights: 103
initial value 97.293138
iter 10 value 94.060126
iter 20 value 94.053538
iter 30 value 93.459769
iter 40 value 85.470496
iter 50 value 83.253745
iter 60 value 81.774082
iter 70 value 80.638071
iter 80 value 80.390620
iter 90 value 80.363007
final value 80.362840
converged
Fitting Repeat 3
# weights: 103
initial value 96.390187
iter 10 value 94.059615
iter 20 value 87.444957
iter 30 value 85.108093
iter 40 value 83.706199
iter 50 value 83.222143
iter 60 value 83.050185
iter 70 value 82.650420
final value 82.649796
converged
Fitting Repeat 4
# weights: 103
initial value 103.733326
iter 10 value 94.053414
iter 20 value 83.070643
iter 30 value 82.158889
iter 40 value 82.100939
iter 50 value 82.085793
final value 82.085008
converged
Fitting Repeat 5
# weights: 103
initial value 108.353484
iter 10 value 94.054862
iter 20 value 88.903564
iter 30 value 85.559826
iter 40 value 85.185299
iter 50 value 84.935175
iter 60 value 84.695477
iter 70 value 83.881905
iter 80 value 83.363218
iter 90 value 82.701643
iter 100 value 82.663004
final value 82.663004
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 107.770045
iter 10 value 94.076295
iter 20 value 92.002141
iter 30 value 86.256977
iter 40 value 85.435680
iter 50 value 82.820971
iter 60 value 81.046506
iter 70 value 79.561144
iter 80 value 78.599703
iter 90 value 78.357857
iter 100 value 78.291962
final value 78.291962
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.012546
iter 10 value 94.573581
iter 20 value 94.037750
iter 30 value 93.929023
iter 40 value 85.308180
iter 50 value 83.477709
iter 60 value 81.724560
iter 70 value 79.722410
iter 80 value 79.516269
iter 90 value 79.389711
iter 100 value 79.311886
final value 79.311886
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.135857
iter 10 value 93.018593
iter 20 value 83.438768
iter 30 value 82.400388
iter 40 value 82.172836
iter 50 value 81.374341
iter 60 value 79.739131
iter 70 value 79.379719
iter 80 value 78.986842
iter 90 value 78.502543
iter 100 value 78.119693
final value 78.119693
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.160393
iter 10 value 94.520006
iter 20 value 93.791902
iter 30 value 90.938980
iter 40 value 89.247039
iter 50 value 88.661921
iter 60 value 88.015268
iter 70 value 85.236544
iter 80 value 84.562420
iter 90 value 82.649766
iter 100 value 78.993242
final value 78.993242
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.994363
iter 10 value 94.287456
iter 20 value 93.982295
iter 30 value 86.286636
iter 40 value 85.007039
iter 50 value 82.439552
iter 60 value 81.745791
iter 70 value 80.874793
iter 80 value 80.709262
iter 90 value 80.467141
iter 100 value 80.316801
final value 80.316801
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.833804
iter 10 value 93.931877
iter 20 value 88.469033
iter 30 value 87.073373
iter 40 value 86.736370
iter 50 value 82.442341
iter 60 value 81.046085
iter 70 value 80.499029
iter 80 value 80.451014
iter 90 value 80.349226
iter 100 value 80.265112
final value 80.265112
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.143497
iter 10 value 93.743684
iter 20 value 84.421221
iter 30 value 83.818792
iter 40 value 82.796212
iter 50 value 81.270413
iter 60 value 80.777887
iter 70 value 80.717837
iter 80 value 79.701930
iter 90 value 79.363481
iter 100 value 78.767647
final value 78.767647
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.965963
iter 10 value 94.783189
iter 20 value 84.630072
iter 30 value 83.705539
iter 40 value 81.274848
iter 50 value 78.327299
iter 60 value 77.883693
iter 70 value 77.684327
iter 80 value 77.523345
iter 90 value 77.320266
iter 100 value 77.237236
final value 77.237236
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.426368
iter 10 value 92.545755
iter 20 value 83.109643
iter 30 value 81.835651
iter 40 value 81.337135
iter 50 value 80.386961
iter 60 value 79.870983
iter 70 value 79.635942
iter 80 value 79.087420
iter 90 value 78.374001
iter 100 value 78.191350
final value 78.191350
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.197547
iter 10 value 90.747681
iter 20 value 84.062349
iter 30 value 80.133168
iter 40 value 79.473496
iter 50 value 78.660679
iter 60 value 78.480668
iter 70 value 78.351183
iter 80 value 78.173900
iter 90 value 78.021961
iter 100 value 77.942831
final value 77.942831
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.617893
final value 94.054509
converged
Fitting Repeat 2
# weights: 103
initial value 100.726318
final value 94.054661
converged
Fitting Repeat 3
# weights: 103
initial value 97.265206
iter 10 value 93.962973
iter 20 value 90.609017
iter 30 value 85.865905
iter 40 value 85.853343
iter 50 value 85.502711
iter 60 value 85.372009
iter 70 value 85.371802
iter 70 value 85.371801
iter 70 value 85.371801
final value 85.371801
converged
Fitting Repeat 4
# weights: 103
initial value 98.223866
final value 94.054484
converged
Fitting Repeat 5
# weights: 103
initial value 95.300578
iter 10 value 94.055459
iter 20 value 94.052914
iter 30 value 87.626368
iter 40 value 87.457822
iter 50 value 82.596966
iter 60 value 81.641075
iter 70 value 81.322773
iter 80 value 81.314405
iter 90 value 81.310144
final value 81.309964
converged
Fitting Repeat 1
# weights: 305
initial value 97.904570
final value 94.057660
converged
Fitting Repeat 2
# weights: 305
initial value 101.965877
iter 10 value 93.826761
iter 20 value 93.823182
iter 30 value 93.479871
iter 40 value 93.476890
iter 50 value 93.419127
iter 60 value 93.418181
iter 70 value 93.385174
iter 80 value 93.383301
iter 90 value 93.325821
iter 100 value 86.653390
final value 86.653390
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.636038
iter 10 value 87.556299
iter 20 value 83.241501
iter 30 value 81.989921
iter 40 value 80.093830
iter 50 value 79.405243
iter 60 value 79.363345
iter 70 value 79.361431
iter 80 value 79.358404
iter 90 value 79.356281
iter 100 value 79.299252
final value 79.299252
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.030808
iter 10 value 94.057206
iter 20 value 93.979484
iter 30 value 92.982978
iter 40 value 92.962399
iter 50 value 92.566783
iter 60 value 92.562981
final value 92.562943
converged
Fitting Repeat 5
# weights: 305
initial value 103.461041
iter 10 value 94.013556
iter 20 value 94.010394
iter 30 value 93.792099
iter 40 value 87.167806
iter 50 value 85.815631
iter 60 value 85.646190
final value 85.609962
converged
Fitting Repeat 1
# weights: 507
initial value 106.565043
iter 10 value 93.673077
iter 20 value 93.650450
iter 30 value 93.567691
iter 40 value 92.393324
iter 50 value 81.263065
iter 60 value 79.044762
iter 70 value 78.843522
iter 80 value 78.582691
iter 90 value 78.242173
iter 100 value 78.184788
final value 78.184788
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.713951
iter 10 value 94.016856
iter 20 value 93.894144
iter 30 value 93.671876
iter 30 value 93.671876
iter 30 value 93.671876
final value 93.671876
converged
Fitting Repeat 3
# weights: 507
initial value 105.556079
iter 10 value 93.722255
iter 20 value 90.280023
iter 30 value 81.311958
final value 81.311718
converged
Fitting Repeat 4
# weights: 507
initial value 116.906343
iter 10 value 94.014283
iter 20 value 93.962686
iter 30 value 93.949989
iter 40 value 93.945394
iter 50 value 93.943809
iter 60 value 86.914165
iter 70 value 85.352508
iter 80 value 79.890923
iter 90 value 79.833100
iter 100 value 79.827456
final value 79.827456
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.198102
iter 10 value 94.016541
iter 20 value 94.009634
iter 30 value 93.541246
iter 40 value 91.963353
iter 50 value 91.953282
iter 60 value 91.953060
final value 91.953054
converged
Fitting Repeat 1
# weights: 103
initial value 101.784157
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 107.238478
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.847799
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.616131
final value 94.466823
converged
Fitting Repeat 5
# weights: 103
initial value 100.767718
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.864918
iter 10 value 87.705521
final value 87.590732
converged
Fitting Repeat 2
# weights: 305
initial value 96.914412
final value 94.466823
converged
Fitting Repeat 3
# weights: 305
initial value 99.921275
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.002804
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 105.395062
final value 94.484210
converged
Fitting Repeat 1
# weights: 507
initial value 99.520860
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 110.611595
iter 10 value 94.466590
final value 94.466580
converged
Fitting Repeat 3
# weights: 507
initial value 105.215855
iter 10 value 94.467370
final value 94.466823
converged
Fitting Repeat 4
# weights: 507
initial value 104.192654
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 94.924051
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 97.996152
iter 10 value 90.044354
iter 20 value 85.808866
iter 30 value 85.615795
iter 40 value 85.559965
iter 50 value 85.463044
iter 60 value 85.460386
final value 85.460369
converged
Fitting Repeat 2
# weights: 103
initial value 108.114053
iter 10 value 94.488947
iter 20 value 93.954117
iter 30 value 93.870625
iter 40 value 93.835527
iter 50 value 92.225338
iter 60 value 84.892461
iter 70 value 83.922290
iter 80 value 83.809353
iter 90 value 83.531879
iter 100 value 83.403862
final value 83.403862
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.846681
iter 10 value 94.459141
iter 20 value 88.808197
iter 30 value 87.102651
iter 40 value 86.782274
iter 50 value 85.824365
iter 60 value 85.494777
iter 70 value 85.451025
iter 80 value 85.278151
iter 90 value 85.195102
final value 85.192346
converged
Fitting Repeat 4
# weights: 103
initial value 112.150828
iter 10 value 94.076193
iter 20 value 91.146059
iter 30 value 87.246313
iter 40 value 86.880655
iter 50 value 86.550760
iter 60 value 85.742733
iter 70 value 85.537890
iter 80 value 85.486215
iter 90 value 85.405878
iter 100 value 85.340098
final value 85.340098
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.196220
iter 10 value 94.527697
iter 20 value 93.920175
iter 30 value 86.848463
iter 40 value 85.716400
iter 50 value 85.566668
iter 60 value 84.472846
iter 70 value 83.565636
iter 80 value 83.251329
final value 83.231462
converged
Fitting Repeat 1
# weights: 305
initial value 137.928402
iter 10 value 95.392340
iter 20 value 92.911936
iter 30 value 88.846131
iter 40 value 87.109284
iter 50 value 86.735800
iter 60 value 85.337912
iter 70 value 84.714701
iter 80 value 83.835087
iter 90 value 83.644221
iter 100 value 83.381188
final value 83.381188
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.040278
iter 10 value 94.556462
iter 20 value 94.410964
iter 30 value 91.851859
iter 40 value 88.401661
iter 50 value 86.665411
iter 60 value 85.846225
iter 70 value 85.744453
iter 80 value 84.928303
iter 90 value 84.145593
iter 100 value 83.056826
final value 83.056826
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.946567
iter 10 value 94.484904
iter 20 value 88.644542
iter 30 value 87.831463
iter 40 value 87.277364
iter 50 value 86.109886
iter 60 value 85.757402
iter 70 value 85.485636
iter 80 value 84.757156
iter 90 value 83.559838
iter 100 value 83.223195
final value 83.223195
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.386817
iter 10 value 94.475421
iter 20 value 92.640758
iter 30 value 92.425172
iter 40 value 89.822505
iter 50 value 86.062756
iter 60 value 85.628190
iter 70 value 85.416638
iter 80 value 85.077894
iter 90 value 84.342944
iter 100 value 83.449847
final value 83.449847
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.067590
iter 10 value 94.465383
iter 20 value 93.404594
iter 30 value 93.263085
iter 40 value 86.511971
iter 50 value 86.207733
iter 60 value 85.992766
iter 70 value 85.128367
iter 80 value 84.372763
iter 90 value 83.898872
iter 100 value 83.686642
final value 83.686642
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.843040
iter 10 value 92.492482
iter 20 value 86.792671
iter 30 value 85.968564
iter 40 value 84.849899
iter 50 value 83.343054
iter 60 value 83.205971
iter 70 value 83.155123
iter 80 value 82.655258
iter 90 value 82.256397
iter 100 value 82.041413
final value 82.041413
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.790205
iter 10 value 94.395931
iter 20 value 89.736891
iter 30 value 85.468598
iter 40 value 84.721022
iter 50 value 84.041142
iter 60 value 83.121892
iter 70 value 82.738200
iter 80 value 82.672677
iter 90 value 82.487800
iter 100 value 82.287864
final value 82.287864
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.880765
iter 10 value 94.766434
iter 20 value 94.254988
iter 30 value 92.152267
iter 40 value 90.772834
iter 50 value 88.083319
iter 60 value 85.467725
iter 70 value 84.311587
iter 80 value 82.912245
iter 90 value 82.375253
iter 100 value 82.070113
final value 82.070113
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.290265
iter 10 value 94.167621
iter 20 value 90.112091
iter 30 value 87.222852
iter 40 value 86.491898
iter 50 value 85.955782
iter 60 value 84.614689
iter 70 value 84.019006
iter 80 value 83.591159
iter 90 value 83.381127
iter 100 value 83.230522
final value 83.230522
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.931126
iter 10 value 94.360839
iter 20 value 92.572985
iter 30 value 92.513901
iter 40 value 92.175227
iter 50 value 88.338155
iter 60 value 86.305854
iter 70 value 85.876951
iter 80 value 85.013081
iter 90 value 84.404255
iter 100 value 83.745039
final value 83.745039
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.233360
iter 10 value 94.485632
iter 20 value 94.471334
iter 30 value 88.827115
iter 40 value 88.466840
iter 50 value 88.316662
final value 88.316502
converged
Fitting Repeat 2
# weights: 103
initial value 103.073649
final value 94.485793
converged
Fitting Repeat 3
# weights: 103
initial value 98.213087
final value 94.486106
converged
Fitting Repeat 4
# weights: 103
initial value 102.467268
final value 94.468420
converged
Fitting Repeat 5
# weights: 103
initial value 96.121822
final value 94.485912
converged
Fitting Repeat 1
# weights: 305
initial value 95.000578
iter 10 value 94.486662
iter 20 value 94.078790
iter 30 value 87.768945
iter 40 value 87.417425
iter 50 value 87.301895
iter 60 value 87.269594
iter 70 value 87.269531
final value 87.269529
converged
Fitting Repeat 2
# weights: 305
initial value 99.131853
iter 10 value 94.488912
iter 20 value 94.449492
iter 30 value 87.892674
iter 40 value 87.353220
iter 50 value 87.339469
iter 60 value 87.337096
iter 70 value 87.331680
iter 80 value 86.750796
iter 90 value 86.644490
iter 100 value 86.642586
final value 86.642586
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.837076
iter 10 value 94.489067
iter 20 value 94.479661
iter 30 value 92.722994
iter 40 value 89.407373
iter 50 value 89.406307
iter 60 value 89.301156
iter 70 value 89.288655
iter 80 value 89.288543
final value 89.288528
converged
Fitting Repeat 4
# weights: 305
initial value 102.647744
iter 10 value 94.489019
iter 20 value 94.428923
iter 30 value 87.578157
iter 40 value 87.532178
iter 50 value 87.000956
iter 60 value 86.386859
iter 70 value 85.699571
iter 80 value 85.698923
iter 90 value 85.696199
final value 85.695896
converged
Fitting Repeat 5
# weights: 305
initial value 97.773765
iter 10 value 94.431472
iter 20 value 94.428319
iter 30 value 94.424272
iter 40 value 94.031984
iter 50 value 93.698227
iter 60 value 88.339201
iter 70 value 87.292127
iter 80 value 84.197929
iter 90 value 82.780949
iter 100 value 82.514928
final value 82.514928
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 121.852855
iter 10 value 94.544271
iter 20 value 94.462207
iter 30 value 91.610098
iter 40 value 87.691427
iter 50 value 87.538104
iter 60 value 87.513576
iter 70 value 87.499970
iter 80 value 85.408336
iter 90 value 85.068774
iter 100 value 85.059137
final value 85.059137
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.345991
iter 10 value 94.474631
iter 20 value 94.335011
iter 30 value 89.804546
iter 40 value 84.854270
iter 50 value 84.539262
iter 60 value 84.525972
iter 70 value 84.510378
final value 84.510310
converged
Fitting Repeat 3
# weights: 507
initial value 99.306389
iter 10 value 94.484532
iter 20 value 94.213949
iter 30 value 86.711738
iter 40 value 86.556667
iter 50 value 86.549412
iter 60 value 86.549006
final value 86.547776
converged
Fitting Repeat 4
# weights: 507
initial value 102.895566
iter 10 value 94.492386
iter 20 value 94.476248
iter 30 value 93.702951
final value 93.702940
converged
Fitting Repeat 5
# weights: 507
initial value 96.928448
iter 10 value 94.473146
iter 20 value 92.095316
final value 91.907812
converged
Fitting Repeat 1
# weights: 103
initial value 98.568229
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.403834
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.261373
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 100.098333
final value 94.466823
converged
Fitting Repeat 5
# weights: 103
initial value 94.574727
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.865691
iter 10 value 93.956631
iter 20 value 93.918057
final value 93.918040
converged
Fitting Repeat 2
# weights: 305
initial value 97.300910
final value 94.466823
converged
Fitting Repeat 3
# weights: 305
initial value 95.576720
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 98.387439
iter 10 value 92.316148
iter 20 value 88.133414
iter 30 value 87.799779
iter 40 value 87.589861
iter 50 value 87.588902
final value 87.588893
converged
Fitting Repeat 5
# weights: 305
initial value 96.966021
final value 94.461539
converged
Fitting Repeat 1
# weights: 507
initial value 105.515846
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 103.121374
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 94.884301
final value 94.482932
converged
Fitting Repeat 4
# weights: 507
initial value 105.367778
final value 94.449438
converged
Fitting Repeat 5
# weights: 507
initial value 104.540087
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 103.787916
iter 10 value 94.491347
iter 20 value 92.955590
iter 30 value 87.531684
iter 40 value 87.375333
iter 50 value 87.257281
iter 60 value 87.195964
iter 70 value 86.543549
iter 80 value 85.926817
iter 90 value 85.831913
iter 100 value 85.342875
final value 85.342875
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 109.693461
iter 10 value 94.345737
iter 20 value 91.395663
iter 30 value 91.011213
iter 40 value 87.101238
iter 50 value 87.022212
iter 60 value 86.915006
iter 70 value 86.716416
iter 80 value 86.088742
iter 90 value 85.462714
iter 100 value 84.463768
final value 84.463768
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.772803
iter 10 value 94.287180
iter 20 value 90.451248
iter 30 value 88.611372
iter 40 value 87.792260
iter 50 value 86.036738
iter 60 value 84.392621
iter 70 value 83.915023
iter 80 value 83.803801
final value 83.803790
converged
Fitting Repeat 4
# weights: 103
initial value 107.335193
iter 10 value 94.485404
iter 20 value 90.252547
iter 30 value 87.306608
iter 40 value 87.161028
iter 50 value 86.865044
iter 60 value 86.722086
iter 70 value 85.975063
iter 80 value 85.596384
final value 85.532314
converged
Fitting Repeat 5
# weights: 103
initial value 98.459180
iter 10 value 94.490757
iter 20 value 93.870037
iter 30 value 88.932248
iter 40 value 87.179575
iter 50 value 86.896032
iter 60 value 86.713475
iter 70 value 86.462510
iter 80 value 85.578446
iter 90 value 85.532344
final value 85.532314
converged
Fitting Repeat 1
# weights: 305
initial value 126.149757
iter 10 value 94.512562
iter 20 value 92.322605
iter 30 value 91.378239
iter 40 value 89.440002
iter 50 value 87.389089
iter 60 value 86.313366
iter 70 value 85.468789
iter 80 value 84.601815
iter 90 value 83.732675
iter 100 value 83.515597
final value 83.515597
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.524570
iter 10 value 94.532047
iter 20 value 93.453616
iter 30 value 86.145504
iter 40 value 84.852583
iter 50 value 83.462853
iter 60 value 83.295049
iter 70 value 83.202083
iter 80 value 82.970083
iter 90 value 82.824937
iter 100 value 82.713987
final value 82.713987
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.112434
iter 10 value 94.496908
iter 20 value 94.434338
iter 30 value 91.311874
iter 40 value 87.656395
iter 50 value 84.956733
iter 60 value 84.237181
iter 70 value 83.698048
iter 80 value 82.984118
iter 90 value 82.586665
iter 100 value 82.407632
final value 82.407632
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.338014
iter 10 value 93.591206
iter 20 value 87.910928
iter 30 value 87.761989
iter 40 value 87.386727
iter 50 value 86.649808
iter 60 value 86.034331
iter 70 value 84.416512
iter 80 value 83.767230
iter 90 value 83.659712
iter 100 value 83.641352
final value 83.641352
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.208085
iter 10 value 95.989350
iter 20 value 95.325070
iter 30 value 91.613493
iter 40 value 88.164470
iter 50 value 86.417690
iter 60 value 85.518029
iter 70 value 84.882714
iter 80 value 83.726722
iter 90 value 83.100038
iter 100 value 82.871740
final value 82.871740
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.357077
iter 10 value 93.875781
iter 20 value 88.747080
iter 30 value 87.755667
iter 40 value 86.130236
iter 50 value 84.827317
iter 60 value 84.165000
iter 70 value 83.403732
iter 80 value 82.996859
iter 90 value 82.321738
iter 100 value 82.175372
final value 82.175372
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.862579
iter 10 value 94.225651
iter 20 value 89.129616
iter 30 value 85.313857
iter 40 value 84.199761
iter 50 value 83.756916
iter 60 value 83.592967
iter 70 value 83.322999
iter 80 value 83.011424
iter 90 value 82.874920
iter 100 value 82.570354
final value 82.570354
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.037940
iter 10 value 95.629789
iter 20 value 90.245967
iter 30 value 87.170625
iter 40 value 85.158391
iter 50 value 83.329278
iter 60 value 83.076362
iter 70 value 82.798489
iter 80 value 82.598695
iter 90 value 82.458184
iter 100 value 82.428861
final value 82.428861
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.051048
iter 10 value 94.609071
iter 20 value 90.320223
iter 30 value 87.776510
iter 40 value 85.116646
iter 50 value 84.195300
iter 60 value 83.390477
iter 70 value 83.182660
iter 80 value 82.883664
iter 90 value 82.643551
iter 100 value 82.540161
final value 82.540161
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.899520
iter 10 value 94.561509
iter 20 value 91.597973
iter 30 value 87.862560
iter 40 value 87.491542
iter 50 value 87.208956
iter 60 value 85.954934
iter 70 value 83.475563
iter 80 value 82.880047
iter 90 value 82.791751
iter 100 value 82.598857
final value 82.598857
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.336805
final value 94.485562
converged
Fitting Repeat 2
# weights: 103
initial value 100.143469
iter 10 value 94.485953
iter 20 value 94.484277
iter 30 value 93.838116
iter 40 value 86.273765
iter 50 value 86.207579
iter 60 value 85.893802
iter 70 value 85.164854
iter 80 value 85.155621
final value 85.155500
converged
Fitting Repeat 3
# weights: 103
initial value 104.032091
iter 10 value 94.486062
iter 20 value 94.481409
iter 30 value 93.911465
iter 40 value 86.019947
iter 50 value 85.275848
iter 60 value 85.275206
iter 70 value 85.147423
final value 85.147369
converged
Fitting Repeat 4
# weights: 103
initial value 98.418718
final value 94.485687
converged
Fitting Repeat 5
# weights: 103
initial value 96.556126
final value 94.485654
converged
Fitting Repeat 1
# weights: 305
initial value 104.047142
iter 10 value 90.998432
iter 20 value 89.605636
iter 30 value 89.063278
iter 40 value 89.061744
final value 89.060261
converged
Fitting Repeat 2
# weights: 305
initial value 99.063012
iter 10 value 94.488881
iter 20 value 94.477823
iter 30 value 89.319361
iter 40 value 88.710907
iter 50 value 88.709332
iter 60 value 85.332570
iter 70 value 85.160636
iter 80 value 85.148513
iter 80 value 85.148512
iter 80 value 85.148512
final value 85.148512
converged
Fitting Repeat 3
# weights: 305
initial value 99.778532
iter 10 value 94.471660
iter 20 value 94.463361
iter 30 value 94.429733
final value 94.429449
converged
Fitting Repeat 4
# weights: 305
initial value 107.613563
iter 10 value 94.489514
iter 20 value 94.465009
iter 30 value 88.614573
iter 40 value 86.508195
final value 86.504498
converged
Fitting Repeat 5
# weights: 305
initial value 97.785910
iter 10 value 94.489245
iter 20 value 94.484234
iter 30 value 93.995815
iter 40 value 87.342492
iter 50 value 86.454807
iter 60 value 86.366590
iter 70 value 86.357460
final value 86.353940
converged
Fitting Repeat 1
# weights: 507
initial value 106.625961
iter 10 value 94.458189
iter 20 value 94.388520
iter 30 value 94.385048
iter 40 value 94.383404
iter 50 value 94.380095
iter 60 value 94.379748
final value 94.379690
converged
Fitting Repeat 2
# weights: 507
initial value 119.363248
iter 10 value 94.492710
iter 20 value 94.410162
iter 30 value 90.541803
iter 40 value 90.448951
iter 50 value 90.399940
iter 60 value 87.525183
iter 70 value 84.559688
iter 80 value 83.772231
iter 90 value 83.548258
iter 100 value 83.468887
final value 83.468887
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 97.758405
iter 10 value 94.492170
iter 20 value 94.484492
iter 30 value 94.426180
iter 40 value 87.333397
iter 50 value 85.340668
iter 60 value 84.750474
final value 84.750417
converged
Fitting Repeat 4
# weights: 507
initial value 94.679008
iter 10 value 94.474724
iter 20 value 94.463538
iter 30 value 90.189053
iter 40 value 88.916045
iter 50 value 88.895049
iter 60 value 88.567057
iter 70 value 87.867976
iter 80 value 87.827355
iter 90 value 87.822209
iter 100 value 87.812649
final value 87.812649
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.431996
iter 10 value 94.457631
iter 20 value 94.450976
final value 94.450953
converged
Fitting Repeat 1
# weights: 103
initial value 117.412020
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.839881
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.568125
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 103.907377
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 103.297597
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.436232
iter 10 value 94.199750
iter 20 value 90.040289
iter 30 value 89.815382
final value 89.812156
converged
Fitting Repeat 2
# weights: 305
initial value 102.774379
final value 94.448052
converged
Fitting Repeat 3
# weights: 305
initial value 93.242969
iter 10 value 84.243341
iter 20 value 81.987241
iter 30 value 81.968514
iter 40 value 81.966771
final value 81.966696
converged
Fitting Repeat 4
# weights: 305
initial value 97.682095
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 100.292771
final value 94.275363
converged
Fitting Repeat 1
# weights: 507
initial value 101.931752
iter 10 value 89.231554
iter 20 value 86.760882
iter 30 value 86.130312
iter 40 value 86.129365
iter 50 value 85.577621
iter 60 value 85.490857
final value 85.490753
converged
Fitting Repeat 2
# weights: 507
initial value 119.731489
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 100.240079
iter 10 value 88.571746
iter 20 value 86.854422
final value 86.644766
converged
Fitting Repeat 4
# weights: 507
initial value 95.220038
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 97.714241
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 98.907117
iter 10 value 94.491157
iter 20 value 93.937625
iter 30 value 93.710466
iter 40 value 93.703720
iter 50 value 88.206139
iter 60 value 85.400205
iter 70 value 84.938816
iter 80 value 84.927486
iter 90 value 84.925184
iter 100 value 84.864431
final value 84.864431
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.863548
iter 10 value 94.489508
iter 20 value 94.194437
iter 30 value 90.236062
iter 40 value 89.824350
iter 50 value 89.632952
iter 60 value 82.613194
iter 70 value 81.662879
iter 80 value 81.500477
iter 90 value 80.925102
iter 100 value 80.576514
final value 80.576514
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.572995
iter 10 value 94.392417
iter 20 value 89.555187
iter 30 value 86.539828
iter 40 value 85.403572
iter 50 value 85.115067
iter 60 value 84.881282
iter 70 value 84.833666
final value 84.833656
converged
Fitting Repeat 4
# weights: 103
initial value 96.389121
iter 10 value 94.466682
iter 20 value 88.873005
iter 30 value 85.801663
iter 40 value 85.590137
iter 50 value 85.443533
iter 60 value 85.329251
iter 70 value 84.812033
iter 80 value 81.857658
iter 90 value 81.114108
iter 100 value 80.669073
final value 80.669073
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.504983
iter 10 value 94.518898
iter 20 value 94.489737
iter 30 value 94.016322
iter 40 value 86.419146
iter 50 value 83.914982
iter 60 value 82.155323
iter 70 value 81.135867
iter 80 value 80.847205
iter 90 value 80.772875
iter 100 value 80.627244
final value 80.627244
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 108.523947
iter 10 value 94.378777
iter 20 value 86.481624
iter 30 value 85.276058
iter 40 value 84.867781
iter 50 value 84.814997
iter 60 value 84.780685
iter 70 value 84.198565
iter 80 value 83.088931
iter 90 value 81.098845
iter 100 value 80.030265
final value 80.030265
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.047129
iter 10 value 94.176689
iter 20 value 92.213559
iter 30 value 86.112533
iter 40 value 84.760081
iter 50 value 84.377479
iter 60 value 83.837739
iter 70 value 83.600358
iter 80 value 81.684820
iter 90 value 81.268761
iter 100 value 80.983328
final value 80.983328
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.599196
iter 10 value 93.801364
iter 20 value 82.897766
iter 30 value 82.061633
iter 40 value 81.650335
iter 50 value 81.028440
iter 60 value 80.796030
iter 70 value 80.695739
iter 80 value 80.522080
iter 90 value 80.394975
iter 100 value 80.309731
final value 80.309731
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.062015
iter 10 value 94.396601
iter 20 value 93.574407
iter 30 value 92.873785
iter 40 value 87.120188
iter 50 value 84.708951
iter 60 value 82.686607
iter 70 value 82.074959
iter 80 value 81.529757
iter 90 value 81.273222
iter 100 value 80.434359
final value 80.434359
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.038294
iter 10 value 94.545383
iter 20 value 87.399659
iter 30 value 85.834114
iter 40 value 84.798590
iter 50 value 84.258879
iter 60 value 82.500089
iter 70 value 80.183940
iter 80 value 79.508865
iter 90 value 79.400344
iter 100 value 79.322934
final value 79.322934
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.672671
iter 10 value 94.351110
iter 20 value 89.916955
iter 30 value 83.866161
iter 40 value 81.719506
iter 50 value 79.617169
iter 60 value 79.438961
iter 70 value 78.976461
iter 80 value 78.890457
iter 90 value 78.828494
iter 100 value 78.802411
final value 78.802411
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.645981
iter 10 value 94.275634
iter 20 value 84.042396
iter 30 value 83.192830
iter 40 value 82.532263
iter 50 value 81.895260
iter 60 value 81.110241
iter 70 value 80.787242
iter 80 value 80.626739
iter 90 value 80.464679
iter 100 value 80.034587
final value 80.034587
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.213478
iter 10 value 94.467350
iter 20 value 87.315496
iter 30 value 85.685218
iter 40 value 84.488524
iter 50 value 82.141060
iter 60 value 81.424999
iter 70 value 81.134384
iter 80 value 80.179090
iter 90 value 79.952706
iter 100 value 79.839188
final value 79.839188
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.834995
iter 10 value 94.189874
iter 20 value 87.764070
iter 30 value 84.974583
iter 40 value 84.429688
iter 50 value 81.967492
iter 60 value 80.865440
iter 70 value 80.098863
iter 80 value 79.932848
iter 90 value 79.835720
iter 100 value 79.504603
final value 79.504603
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.245956
iter 10 value 95.157664
iter 20 value 85.799459
iter 30 value 83.763768
iter 40 value 81.992360
iter 50 value 80.883928
iter 60 value 80.141392
iter 70 value 80.016622
iter 80 value 79.874354
iter 90 value 79.734644
iter 100 value 79.580596
final value 79.580596
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.754329
final value 94.485883
converged
Fitting Repeat 2
# weights: 103
initial value 98.742584
final value 94.486071
converged
Fitting Repeat 3
# weights: 103
initial value 98.019756
final value 94.485831
converged
Fitting Repeat 4
# weights: 103
initial value 98.152443
final value 94.486139
converged
Fitting Repeat 5
# weights: 103
initial value 95.212699
final value 94.485526
converged
Fitting Repeat 1
# weights: 305
initial value 98.530762
iter 10 value 94.488481
iter 20 value 93.838932
iter 30 value 93.588869
iter 40 value 93.579846
iter 50 value 90.937357
iter 60 value 85.491837
final value 85.491427
converged
Fitting Repeat 2
# weights: 305
initial value 101.105768
iter 10 value 94.488064
iter 20 value 94.401239
final value 93.637817
converged
Fitting Repeat 3
# weights: 305
initial value 99.148659
iter 10 value 93.644114
iter 20 value 93.641921
iter 30 value 93.576477
iter 40 value 93.065532
iter 40 value 93.065531
iter 50 value 92.838364
iter 60 value 83.812889
iter 70 value 79.920476
iter 80 value 79.376523
iter 90 value 79.173424
iter 100 value 78.728176
final value 78.728176
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 96.531005
iter 10 value 94.489115
iter 20 value 94.483913
iter 30 value 91.738378
final value 91.580858
converged
Fitting Repeat 5
# weights: 305
initial value 107.189838
iter 10 value 93.988909
iter 20 value 93.985648
iter 30 value 87.767398
iter 40 value 83.920571
iter 50 value 81.050586
iter 60 value 80.913238
iter 70 value 80.912819
iter 80 value 80.912212
final value 80.912047
converged
Fitting Repeat 1
# weights: 507
initial value 102.937398
iter 10 value 94.456033
iter 20 value 94.449781
final value 94.449598
converged
Fitting Repeat 2
# weights: 507
initial value 116.270475
iter 10 value 94.492515
iter 20 value 94.484162
iter 30 value 85.046325
iter 40 value 82.763093
iter 50 value 82.130200
iter 60 value 82.098814
iter 70 value 81.667644
iter 80 value 79.596177
iter 90 value 79.374655
iter 100 value 79.368134
final value 79.368134
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.860945
iter 10 value 93.781514
iter 20 value 93.764030
iter 30 value 93.579023
iter 40 value 93.476378
iter 50 value 93.476271
iter 60 value 93.475724
iter 70 value 93.475587
final value 93.475556
converged
Fitting Repeat 4
# weights: 507
initial value 109.218106
iter 10 value 94.283845
iter 20 value 94.277413
iter 30 value 94.015935
iter 40 value 91.444173
iter 50 value 91.272520
iter 60 value 80.847927
iter 70 value 79.811985
final value 79.811531
converged
Fitting Repeat 5
# weights: 507
initial value 96.761344
iter 10 value 94.283112
iter 20 value 94.173713
iter 30 value 83.352553
iter 40 value 81.954933
iter 50 value 81.781035
iter 60 value 81.585799
iter 70 value 81.391882
iter 80 value 78.954189
iter 90 value 78.336638
iter 100 value 78.315215
final value 78.315215
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.206597
iter 10 value 117.895848
iter 20 value 115.550654
iter 30 value 107.050275
iter 40 value 106.715079
iter 50 value 106.645360
final value 106.645172
converged
Fitting Repeat 2
# weights: 507
initial value 123.355089
iter 10 value 117.899157
iter 20 value 117.872993
iter 30 value 114.812861
iter 40 value 114.039526
iter 50 value 114.032297
iter 60 value 108.627735
iter 70 value 108.401831
iter 80 value 108.369145
iter 90 value 108.366311
iter 100 value 108.362982
final value 108.362982
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 158.090359
iter 10 value 117.203318
iter 20 value 116.959323
iter 30 value 116.956498
iter 40 value 116.871933
final value 116.869127
converged
Fitting Repeat 4
# weights: 507
initial value 123.727945
iter 10 value 117.898439
iter 20 value 117.887797
iter 30 value 114.755351
iter 40 value 108.132238
iter 50 value 107.004679
iter 60 value 106.746255
iter 70 value 102.517258
iter 80 value 101.111117
iter 90 value 101.062518
iter 100 value 101.054332
final value 101.054332
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 131.002655
iter 10 value 116.630956
iter 20 value 112.021345
iter 30 value 109.838292
iter 40 value 109.659431
iter 50 value 109.270335
iter 60 value 109.162416
iter 70 value 109.160172
iter 80 value 109.151092
final value 109.150989
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Feb 24 12:41:12 2023
***********************************************
Number of test functions: 8
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 8 test functions, 0 errors, 0 failures
Number of test functions: 8
Number of errors: 0
Number of failures: 0
Warning messages:
1: The `.data` argument of `add_column()` must have unique names as of tibble
3.0.0.
ℹ Use `.name_repair = "minimal"`.
ℹ The deprecated feature was likely used in the tibble package.
Please report the issue at <https://github.com/tidyverse/tibble/issues>.
2: `repeats` has no meaning for this resampling method.
3: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
53.470 1.805 68.822
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 37.915 | 0.548 | 38.475 | |
| FreqInteractors | 0.289 | 0.008 | 0.299 | |
| calculateAAC | 0.066 | 0.015 | 0.082 | |
| calculateAutocor | 0.762 | 0.003 | 0.768 | |
| calculateBE | 0.242 | 0.000 | 0.242 | |
| calculateCTDC | 0.134 | 0.004 | 0.138 | |
| calculateCTDD | 0.945 | 0.012 | 0.958 | |
| calculateCTDT | 0.311 | 0.000 | 0.311 | |
| calculateCTriad | 0.475 | 0.008 | 0.483 | |
| calculateDC | 0.137 | 0.004 | 0.141 | |
| calculateF | 0.755 | 0.001 | 0.756 | |
| calculateKSAAP | 0.167 | 0.019 | 0.187 | |
| calculateQD_Sm | 2.389 | 0.024 | 2.414 | |
| calculateTC | 2.427 | 0.064 | 2.490 | |
| calculateTC_Sm | 0.375 | 0.004 | 0.378 | |
| corr_plot | 38.216 | 0.415 | 38.638 | |
| enrichfindP | 0.407 | 0.057 | 15.516 | |
| enrichfind_hp | 0.041 | 0.003 | 1.549 | |
| enrichplot | 0.350 | 0.028 | 0.378 | |
| filter_missing_values | 0.000 | 0.002 | 0.002 | |
| getFASTA | 0.721 | 0.024 | 9.702 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.003 | 0.000 | 0.002 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.002 | 0.000 | 0.002 | |
| plotPPI | 0.083 | 0.000 | 0.086 | |
| pred_ensembel | 18.420 | 0.517 | 16.636 | |
| var_imp | 38.415 | 0.692 | 39.108 | |