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This page was generated on 2023-02-27 02:34:35 -0000 (Mon, 27 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4259
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CHECK results for HilbertCurve on kunpeng1


To the developers/maintainers of the HilbertCurve package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 899/2169HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.29.0  (landing page)
Zuguang Gu
Snapshot Date: 2023-02-23 09:40:21 -0000 (Thu, 23 Feb 2023)
git_url: https://git.bioconductor.org/packages/HilbertCurve
git_branch: master
git_last_commit: 86968d4
git_last_commit_date: 2022-11-01 15:11:58 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: HilbertCurve
Version: 1.29.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HilbertCurve_1.29.0.tar.gz
StartedAt: 2023-02-24 12:28:59 -0000 (Fri, 24 Feb 2023)
EndedAt: 2023-02-24 12:34:10 -0000 (Fri, 24 Feb 2023)
EllapsedTime: 311.4 seconds
RetCode: 0
Status:   OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HilbertCurve_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        15.635  0.148  15.783
hc_layer-GenomicHilbertCurve-method 12.107  0.240  12.348
GenomicHilbertCurve                  9.889  0.412  10.904
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘HilbertCurve.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HilbertCurve
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
  4.650   0.212   4.845 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class000
GenomicHilbertCurve 9.889 0.41210.904
HilbertCurve-class000
HilbertCurve0.6420.0160.658
default_overlay000
hc_centered_text-HilbertCurve-method0.1660.0000.166
hc_layer-GenomicHilbertCurve-method12.107 0.24012.348
hc_layer-HilbertCurve-method15.635 0.14815.783
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0340.0000.034
hc_map-GenomicHilbertCurve-method4.1720.0074.179
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method0.0110.0000.011
hc_png-HilbertCurve-method4.8280.0364.863
hc_points-GenomicHilbertCurve-method0.4450.0160.462
hc_points-HilbertCurve-method0.6860.0080.694
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.5320.0010.534
hc_polygon-HilbertCurve-method0.1130.0040.116
hc_polygon-dispatch000
hc_rect-GenomicHilbertCurve-method0.3750.0000.375
hc_rect-HilbertCurve-method0.0770.0040.082
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method0.0000.0000.001
hc_segments-GenomicHilbertCurve-method0.6280.0040.632
hc_segments-HilbertCurve-method0.0940.0040.098
hc_segments-dispatch0.0000.0000.001
hc_text-GenomicHilbertCurve-method0.2870.0080.296
hc_text-HilbertCurve-method0.0710.0000.070
hc_text-dispatch000
is_white000
show-HilbertCurve-method0.0090.0000.009
unzoom-HilbertCurve-method0.0080.0000.008
zoom-HilbertCurve-method0.0080.0000.008