Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-27 02:34:39 -0000 (Mon, 27 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
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To the developers/maintainers of the NuPoP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NuPoP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1360/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NuPoP 2.7.2 (landing page) Ji-Ping Wang
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: NuPoP |
Version: 2.7.2 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL NuPoP |
StartedAt: 2023-02-23 11:40:27 -0000 (Thu, 23 Feb 2023) |
EndedAt: 2023-02-23 11:40:41 -0000 (Thu, 23 Feb 2023) |
EllapsedTime: 13.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL NuPoP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘NuPoP’ ... ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ gfortran -fPIC -g -O2 -Wall -c cvtbfb.f90 -o cvtbfb.o gfortran -fPIC -g -O2 -Wall -c cvtbfbNL4.f90 -o cvtbfbNL4.o cvtbfbNL4.f90:13:51: 13 | real*8 freqN4(4,4,4,4),tranN4(5:147,4,4,4,4,4),freqL4(4,4,4,4) | 1 Warning: Array ‘trann4’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] gfortran -fPIC -g -O2 -Wall -c vtbfb.f90 -o vtbfb.o gfortran -fPIC -g -O2 -Wall -c vtbfbNL4.f90 -o vtbfbNL4.o vtbfbNL4.f90:13:51: 13 | real*8 freqN4(4,4,4,4),tranN4(5:147,4,4,4,4,4),freqL4(4,4,4,4) | 1 Warning: Array ‘trann4’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] gcc -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o NuPoP.so cvtbfb.o cvtbfbNL4.o vtbfb.o vtbfbNL4.o -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-NuPoP/00new/NuPoP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NuPoP)