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This page was generated on 2023-02-27 02:34:39 -0000 (Mon, 27 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4259
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INSTALL results for OmnipathR on kunpeng1


To the developers/maintainers of the OmnipathR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 1383/2169HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmnipathR 3.7.2  (landing page)
Denes Turei
Snapshot Date: 2023-02-23 09:40:21 -0000 (Thu, 23 Feb 2023)
git_url: https://git.bioconductor.org/packages/OmnipathR
git_branch: master
git_last_commit: c5f63b4
git_last_commit_date: 2023-02-10 13:30:01 -0000 (Fri, 10 Feb 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: OmnipathR
Version: 3.7.2
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OmnipathR
StartedAt: 2023-02-23 11:38:18 -0000 (Thu, 23 Feb 2023)
EndedAt: 2023-02-23 11:38:33 -0000 (Thu, 23 Feb 2023)
EllapsedTime: 15.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OmnipathR
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:30] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] Contains 3 files.
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-02-23 11:38:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:30] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:31] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:32] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Contains 1 files.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:32] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-02-23 11:38:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:33] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-02-23 11:38:33] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:33] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-02-23 11:38:33] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-02-23 11:38:33] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)