| Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-27 02:34:42 -0000 (Mon, 27 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ReUseData package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReUseData.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1645/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ReUseData 0.99.36 (landing page) Qian Liu
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: ReUseData |
| Version: 0.99.36 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData |
| StartedAt: 2023-02-23 23:43:12 -0000 (Thu, 23 Feb 2023) |
| EndedAt: 2023-02-23 23:43:49 -0000 (Thu, 23 Feb 2023) |
| EllapsedTime: 36.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData
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* checking for file ‘ReUseData/DESCRIPTION’ ... OK
* preparing ‘ReUseData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ReUseData_data.Rmd’ using rmarkdown
Quitting from lines 92-98 (ReUseData_data.Rmd)
Error: processing vignette 'ReUseData_data.Rmd' failed with diagnostics:
NA/NaN argument
--- failed re-building ‘ReUseData_data.Rmd’
--- re-building ‘ReUseData_quickStart.Rmd’ using rmarkdown
Traceback (most recent call last):
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/bin/cwltool", line 11, in <module>
sys.exit(run())
File "cwltool/main.py", line 1518, in run
File "cwltool/main.py", line 1061, in main
File "cwltool/utils.py", line 127, in versionstring
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages/pkg_resources/__init__.py", line 956, in require
needed = self.resolve(parse_requirements(requirements))
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages/pkg_resources/__init__.py", line 815, in resolve
dist = self._resolve_dist(
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages/pkg_resources/__init__.py", line 861, in _resolve_dist
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (cwl-utils 0.19 (/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages), Requirement.parse('cwl-utils>=0.22'), {'cwltool'})
Quitting from lines 76-85 (ReUseData_quickStart.Rmd)
Error: processing vignette 'ReUseData_quickStart.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘ReUseData_quickStart.Rmd’
--- re-building ‘ReUseData_recipe.Rmd’ using rmarkdown
Traceback (most recent call last):
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/bin/cwltool", line 11, in <module>
sys.exit(run())
File "cwltool/main.py", line 1518, in run
File "cwltool/main.py", line 1061, in main
File "cwltool/utils.py", line 127, in versionstring
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages/pkg_resources/__init__.py", line 956, in require
needed = self.resolve(parse_requirements(requirements))
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages/pkg_resources/__init__.py", line 815, in resolve
dist = self._resolve_dist(
File "/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages/pkg_resources/__init__.py", line 861, in _resolve_dist
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (cwl-utils 0.19 (/home/biocbuild/.cache/R/basilisk/1.11.2/Rcwl/1.15.5/env_Rcwl/lib/python3.8/site-packages), Requirement.parse('cwl-utils>=0.22'), {'cwltool'})
Quitting from lines 166-172 (ReUseData_recipe.Rmd)
Error: processing vignette 'ReUseData_recipe.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘ReUseData_recipe.Rmd’
SUMMARY: processing the following files failed:
‘ReUseData_data.Rmd’ ‘ReUseData_quickStart.Rmd’
‘ReUseData_recipe.Rmd’
Error: Vignette re-building failed.
Execution halted