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This page was generated on 2023-02-27 02:34:41 -0000 (Mon, 27 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4259
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CHECK results for ReactomeContentService4R on kunpeng1


To the developers/maintainers of the ReactomeContentService4R package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeContentService4R.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1614/2169HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeContentService4R 1.7.0  (landing page)
Chi-Lam Poon
Snapshot Date: 2023-02-23 09:40:21 -0000 (Thu, 23 Feb 2023)
git_url: https://git.bioconductor.org/packages/ReactomeContentService4R
git_branch: master
git_last_commit: 555984b
git_last_commit_date: 2022-11-01 15:23:31 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: ReactomeContentService4R
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ReactomeContentService4R.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ReactomeContentService4R_1.7.0.tar.gz
StartedAt: 2023-02-24 16:58:34 -0000 (Fri, 24 Feb 2023)
EndedAt: 2023-02-24 17:01:07 -0000 (Fri, 24 Feb 2023)
EllapsedTime: 153.3 seconds
RetCode: 0
Status:   OK  
CheckDir: ReactomeContentService4R.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ReactomeContentService4R.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ReactomeContentService4R_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ReactomeContentService4R.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘ReactomeContentService4R/DESCRIPTION’ ... OK
* this is package ‘ReactomeContentService4R’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ReactomeContentService4R’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getSchemaClass 0.099   0.01   7.863
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘ReactomeContentService4R.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ReactomeContentService4R.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ReactomeContentService4R
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘ReactomeContentService4R’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ReactomeContentService4R)

Tests output


Example timings

ReactomeContentService4R.Rcheck/ReactomeContentService4R-Ex.timings

nameusersystemelapsed
discover0.0310.0000.291
exportEventFile0.010.000.27
exportImage0.0570.0112.386
getEntities0.0950.0162.749
getEventsHierarchy000
getOrthology0.0360.0042.538
getParticipants0.0610.0070.906
getPathways0.0290.0041.488
getPerson0.0360.0004.263
getSchemaClass0.0990.0107.863
getSpecies0.0750.0001.113
listSearchItems0.0170.0000.308
mapId0.0600.0283.549
query0.0140.0070.272
searchQuery0.0340.0081.500
spellCheck0.0100.0000.258