| Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-27 02:34:42 -0000 (Mon, 27 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SC3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SC3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1762/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SC3 1.27.0 (landing page) Vladimir Kiselev
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: SC3 |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 |
| StartedAt: 2023-02-24 00:27:32 -0000 (Fri, 24 Feb 2023) |
| EndedAt: 2023-02-24 00:32:56 -0000 (Fri, 24 Feb 2023) |
| EllapsedTime: 323.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 ### ############################################################################## ############################################################################## * checking for file ‘SC3/DESCRIPTION’ ... OK * preparing ‘SC3’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SC3.Rmd’ using rmarkdown starting worker pid=1943198 on localhost:11639 at 00:28:46.769 starting worker pid=1943199 on localhost:11639 at 00:28:46.772 starting worker pid=1943197 on localhost:11639 at 00:28:46.775 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=1943277 on localhost:11639 at 00:29:01.595 starting worker pid=1943275 on localhost:11639 at 00:29:01.595 starting worker pid=1943274 on localhost:11639 at 00:29:01.596 starting worker pid=1943278 on localhost:11639 at 00:29:01.597 starting worker pid=1943276 on localhost:11639 at 00:29:01.597 starting worker pid=1943273 on localhost:11639 at 00:29:01.598 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=1943409 on localhost:11639 at 00:29:11.601 starting worker pid=1943415 on localhost:11639 at 00:29:11.601 starting worker pid=1943406 on localhost:11639 at 00:29:11.604 starting worker pid=1943407 on localhost:11639 at 00:29:11.607 starting worker pid=1943411 on localhost:11639 at 00:29:11.607 starting worker pid=1943398 on localhost:11639 at 00:29:11.608 starting worker pid=1943405 on localhost:11639 at 00:29:11.613 starting worker pid=1943404 on localhost:11639 at 00:29:11.613 starting worker pid=1943412 on localhost:11639 at 00:29:11.614 starting worker pid=1943413 on localhost:11639 at 00:29:11.616 starting worker pid=1943416 on localhost:11639 at 00:29:11.618 starting worker pid=1943417 on localhost:11639 at 00:29:11.620 starting worker pid=1943408 on localhost:11639 at 00:29:11.628 starting worker pid=1943421 on localhost:11639 at 00:29:11.628 starting worker pid=1943403 on localhost:11639 at 00:29:11.629 starting worker pid=1943428 on localhost:11639 at 00:29:11.633 starting worker pid=1943401 on localhost:11639 at 00:29:11.638 starting worker pid=1943420 on localhost:11639 at 00:29:11.646 starting worker pid=1943425 on localhost:11639 at 00:29:11.649 starting worker pid=1943414 on localhost:11639 at 00:29:11.655 starting worker pid=1943427 on localhost:11639 at 00:29:11.667 starting worker pid=1943423 on localhost:11639 at 00:29:11.668 starting worker pid=1943402 on localhost:11639 at 00:29:11.686 starting worker pid=1943400 on localhost:11639 at 00:29:11.686 starting worker pid=1943419 on localhost:11639 at 00:29:11.692 starting worker pid=1943399 on localhost:11639 at 00:29:11.693 starting worker pid=1943424 on localhost:11639 at 00:29:11.693 starting worker pid=1943426 on localhost:11639 at 00:29:11.698 starting worker pid=1943422 on localhost:11639 at 00:29:11.699 starting worker pid=1943418 on localhost:11639 at 00:29:11.700 starting worker pid=1943410 on localhost:11639 at 00:29:11.704 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools | | | | | 0% |= | 1% |== | 2% | |== | 3% | | | | | |===== | 7% |====== | 8% |==== | 6% |======== | 11% |=== | 4% | | | |========= | 12% |======= | 10% |========= | 13% | | |=========== | 16% |========== | 15% | |============ | 17% | |============= | 18% | |============= | 19% | |============== | 20% | |================ | 22% | |=============== | 21% | | |================= | 24% |================= | 25% | |================== | 26% | |=================== | 27% | |====================== | 31% | |==================== | 29% | |===================== | 30% | | |======================= | 33% |======================== | 34% | |==================== | 28% | |====== | 9% | |======================== | 35% | |========================== | 37% | |============================ | 39% | |=========================== | 38% | |========================= | 36% | |============================== | 43% | |============================= | 42% | 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|===================================================================== | 99% | |==================================================================== | 98%starting worker pid=1944022 on localhost:11639 at 00:30:11.565 starting worker pid=1944021 on localhost:11639 at 00:30:11.565 starting worker pid=1944020 on localhost:11639 at 00:30:11.565 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools starting worker pid=1944172 on localhost:11639 at 00:30:21.850 starting worker pid=1944179 on localhost:11639 at 00:30:21.853 starting worker pid=1944173 on localhost:11639 at 00:30:21.853 starting worker pid=1944180 on localhost:11639 at 00:30:21.853 starting worker pid=1944177 on localhost:11639 at 00:30:21.854 starting worker pid=1944175 on localhost:11639 at 00:30:21.854 starting worker pid=1944176 on localhost:11639 at 00:30:21.856 starting worker pid=1944174 on localhost:11639 at 00:30:21.857 starting worker pid=1944178 on localhost:11639 at 00:30:21.858 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=1946059 on localhost:11639 at 00:31:41.385 starting worker pid=1946060 on localhost:11639 at 00:31:41.385 starting worker pid=1946061 on localhost:11639 at 00:31:41.385 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=1946189 on localhost:11639 at 00:31:56.609 starting worker pid=1946191 on localhost:11639 at 00:31:56.610 starting worker pid=1946190 on localhost:11639 at 00:31:56.611 starting worker pid=1946188 on localhost:11639 at 00:31:56.612 starting worker pid=1946192 on localhost:11639 at 00:31:56.613 starting worker pid=1946193 on localhost:11639 at 00:31:56.616 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=1946427 on localhost:11639 at 00:32:07.101 starting worker pid=1946413 on localhost:11639 at 00:32:07.101 starting worker pid=1946421 on localhost:11639 at 00:32:07.101 starting worker pid=1946415 on localhost:11639 at 00:32:07.105 starting worker pid=1946412 on localhost:11639 at 00:32:07.107 starting worker pid=1946425 on localhost:11639 at 00:32:07.108 starting worker pid=1946419 on localhost:11639 at 00:32:07.110 starting worker pid=1946434 on localhost:11639 at 00:32:07.110 starting worker pid=1946417 on localhost:11639 at 00:32:07.111 starting worker pid=1946424 on localhost:11639 at 00:32:07.124 starting worker pid=1946437 on localhost:11639 at 00:32:07.125 starting worker pid=1946423 on localhost:11639 at 00:32:07.131 starting worker pid=1946416 on localhost:11639 at 00:32:07.133 starting worker pid=1946429 on localhost:11639 at 00:32:07.135 starting worker pid=1946440 on localhost:11639 at 00:32:07.150 starting worker pid=1946442 on localhost:11639 at 00:32:07.156 starting worker pid=1946436 on localhost:11639 at 00:32:07.157 starting worker pid=1946433 on localhost:11639 at 00:32:07.170 starting worker pid=1946426 on localhost:11639 at 00:32:07.182 starting worker pid=1946418 on localhost:11639 at 00:32:07.182 starting worker pid=1946422 on localhost:11639 at 00:32:07.185 starting worker pid=1946420 on localhost:11639 at 00:32:07.192 starting worker pid=1946438 on localhost:11639 at 00:32:07.192 starting worker pid=1946428 on localhost:11639 at 00:32:07.193 starting worker pid=1946430 on localhost:11639 at 00:32:07.193 starting worker pid=1946414 on localhost:11639 at 00:32:07.196 starting worker pid=1946432 on localhost:11639 at 00:32:07.200 starting worker pid=1946441 on localhost:11639 at 00:32:07.200 starting worker pid=1946431 on localhost:11639 at 00:32:07.200 starting worker pid=1946435 on localhost:11639 at 00:32:07.200 starting worker pid=1946439 on localhost:11639 at 00:32:07.209 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Killed Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Execution halted Execution halted Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Execution halted Execution halted Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Execution halted