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This page was generated on 2023-02-27 02:34:44 -0000 (Mon, 27 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4259
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BUILD results for SpatialDecon on kunpeng1


To the developers/maintainers of the SpatialDecon package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialDecon.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1917/2169HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpatialDecon 1.9.0  (landing page)
Maddy Griswold
Snapshot Date: 2023-02-23 09:40:21 -0000 (Thu, 23 Feb 2023)
git_url: https://git.bioconductor.org/packages/SpatialDecon
git_branch: master
git_last_commit: 3430c17
git_last_commit_date: 2022-11-01 15:23:08 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: SpatialDecon
Version: 1.9.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialDecon
StartedAt: 2023-02-24 03:01:01 -0000 (Fri, 24 Feb 2023)
EndedAt: 2023-02-24 03:05:53 -0000 (Fri, 24 Feb 2023)
EllapsedTime: 291.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialDecon
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* checking for file ‘SpatialDecon/DESCRIPTION’ ... OK
* preparing ‘SpatialDecon’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SpatialDecon_vignette.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Use of SpatialDecon in a small GeoMx dataet", and the latter is "Use of SpatialDecon in a small GeoMx dataset". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘SpatialDecon_vignette.Rmd’

--- re-building ‘SpatialDecon_vignette_NSCLC.Rmd’ using rmarkdown
--- finished re-building ‘SpatialDecon_vignette_NSCLC.Rmd’

--- re-building ‘SpatialDecon_vignette_ST.Rmd’ using rmarkdown
Killed