Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-27 02:34:44 -0000 (Mon, 27 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the TFHAZ package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFHAZ.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2031/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TFHAZ 1.21.0 (landing page) Gaia Ceddia
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: TFHAZ |
Version: 1.21.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings TFHAZ_1.21.0.tar.gz |
StartedAt: 2023-02-24 19:34:23 -0000 (Fri, 24 Feb 2023) |
EndedAt: 2023-02-24 19:40:37 -0000 (Fri, 24 Feb 2023) |
EllapsedTime: 373.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TFHAZ.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings TFHAZ_1.21.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/TFHAZ.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘TFHAZ/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TFHAZ’ version ‘1.21.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TFHAZ’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed dense_zones 10.043 0.156 10.199 accumulation 6.957 0.231 7.188 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘TFHAZ.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
TFHAZ.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TFHAZ ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘TFHAZ’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFHAZ)
TFHAZ.Rcheck/TFHAZ-Ex.timings
name | user | system | elapsed | |
Ishikawa | 0.089 | 0.012 | 0.101 | |
TF_acc_w_0 | 1.067 | 0.044 | 1.111 | |
TF_dense_w_0 | 0.175 | 0.004 | 0.178 | |
TF_dense_w_10 | 0.175 | 0.000 | 0.176 | |
TF_dense_w_100 | 0.169 | 0.016 | 0.185 | |
TF_dense_w_1000 | 0.152 | 0.039 | 0.192 | |
TF_dense_w_10000 | 0.191 | 0.036 | 0.227 | |
accumulation | 6.957 | 0.231 | 7.188 | |
base_dense_w_10 | 0.196 | 0.000 | 0.196 | |
dense_zones | 10.043 | 0.156 | 10.199 | |
high_accumulation_zones | 1.492 | 0.100 | 1.592 | |
n_zones_PCA | 0.034 | 0.000 | 0.034 | |
plot_accumulation | 0 | 0 | 0 | |
plot_n_zones | 0.011 | 0.000 | 0.011 | |
reg_dense_w_10 | 0.163 | 0.008 | 0.170 | |
w_analysis | 0.012 | 0.000 | 0.012 | |