Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-27 02:34:45 -0000 (Mon, 27 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the XINA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XINA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2158/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
XINA 1.17.0 (landing page) Lang Ho Lee
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: XINA |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:XINA.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings XINA_1.17.0.tar.gz |
StartedAt: 2023-02-24 20:17:01 -0000 (Fri, 24 Feb 2023) |
EndedAt: 2023-02-24 20:20:14 -0000 (Fri, 24 Feb 2023) |
EllapsedTime: 192.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: XINA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:XINA.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings XINA_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/XINA.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘XINA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘XINA’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘XINA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed xina_clustering 39.877 0.088 39.965 plot_condition_compositions 20.223 0.024 20.248 mutate_colors 11.042 0.111 11.155 plot_clusters 10.475 0.027 10.503 get_condition_biased_comigrations 6.949 0.072 7.021 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘xina_user_code.Rmd’ using ‘utf-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
XINA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL XINA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘XINA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XINA)
XINA.Rcheck/XINA-Ex.timings
name | user | system | elapsed | |
alluvial_enriched | 2.922 | 0.029 | 2.950 | |
draw_alluvial_plot | 0.055 | 0.003 | 0.060 | |
get_comigrations_by_name | 0.039 | 0.001 | 0.039 | |
get_condition_biased_comigrations | 6.949 | 0.072 | 7.021 | |
get_unknown_ppi_nodes | 0.063 | 0.000 | 0.063 | |
load_previous_results | 1.371 | 0.016 | 1.387 | |
make_random_xina_data | 0.176 | 0.024 | 0.199 | |
mutate_colors | 11.042 | 0.111 | 11.155 | |
plot_clusters | 10.475 | 0.027 | 10.503 | |
plot_clusters_all | 2.281 | 0.056 | 2.337 | |
plot_condition_compositions | 20.223 | 0.024 | 20.248 | |
plot_enrichment_results | 0.000 | 0.000 | 0.001 | |
xina_analysis | 0 | 0 | 0 | |
xina_clustering | 39.877 | 0.088 | 39.965 | |
xina_enrichment | 0.001 | 0.000 | 0.000 | |
xina_plot_all | 4.268 | 0.100 | 4.351 | |
xina_plot_bycluster | 0.197 | 0.000 | 0.197 | |
xina_plot_single | 0.127 | 0.004 | 0.134 | |