| Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-27 02:34:37 -0000 (Mon, 27 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4259 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the memes package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1118/2169 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| memes 1.7.0 (landing page) Spencer Nystrom
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: memes |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings memes_1.7.0.tar.gz |
| StartedAt: 2023-02-24 13:39:00 -0000 (Fri, 24 Feb 2023) |
| EndedAt: 2023-02-24 13:42:56 -0000 (Fri, 24 Feb 2023) |
| EllapsedTime: 236.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: memes.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings memes_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/memes.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘memes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘memes’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘memes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
add_sequence 8.678 0.42 9.117
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘core_ame.Rmd’ using ‘UTF-8’... OK
‘core_dreme.Rmd’ using ‘UTF-8’... OK
‘core_fimo.Rmd’ using ‘UTF-8’... OK
‘core_tomtom.Rmd’ using ‘UTF-8’... OK
‘install_guide.Rmd’ using ‘UTF-8’... OK
‘integrative_analysis.Rmd’ using ‘UTF-8’... OK
‘tidy_motifs.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
memes.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL memes ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘memes’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memes)
memes.Rcheck/memes-Ex.timings
| name | user | system | elapsed | |
| add_sequence | 8.678 | 0.420 | 9.117 | |
| ame_compare_heatmap_methods | 1.197 | 0.092 | 1.288 | |
| check_meme_install | 0.782 | 0.012 | 0.795 | |
| drop_best_match | 0.009 | 0.000 | 0.009 | |
| example_ame | 0.092 | 0.008 | 0.100 | |
| example_ame_large | 0.072 | 0.000 | 0.072 | |
| force_best_match | 0.07 | 0.00 | 0.07 | |
| get_sequence | 0.520 | 0.024 | 0.565 | |
| has_duplicate_motifs | 0.229 | 0.020 | 0.251 | |
| importAme | 0.267 | 0.031 | 0.286 | |
| importDremeXML | 0.557 | 0.040 | 0.598 | |
| importFimo | 0.063 | 0.020 | 0.079 | |
| importMeme | 0.145 | 0.004 | 0.150 | |
| importStremeXML | 0.313 | 0.012 | 0.326 | |
| importTomTomXML | 1.415 | 0.080 | 1.495 | |
| meme_is_installed | 0.069 | 0.000 | 0.069 | |
| nest_tomtom | 0.068 | 0.000 | 0.068 | |
| plot_ame_heatmap | 0.53 | 0.00 | 0.53 | |
| plot_sequence_heatmap | 3.511 | 0.194 | 3.878 | |
| remove_duplicate_motifs | 0.003 | 0.000 | 0.002 | |
| runAme | 0.066 | 0.000 | 0.067 | |
| runDreme | 0.066 | 0.000 | 0.067 | |
| runFimo | 0.067 | 0.000 | 0.067 | |
| runMeme | 0.066 | 0.000 | 0.066 | |
| runTomTom | 0.066 | 0.000 | 0.066 | |
| update_best_match | 0.131 | 0.000 | 0.132 | |
| view_tomtom_hits | 1.294 | 0.007 | 1.303 | |
| write_fasta | 0.002 | 0.000 | 0.004 | |