Back to Build/check report for BioC 3.17:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-02-27 02:34:37 -0000 (Mon, 27 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4259
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for memes on kunpeng1


To the developers/maintainers of the memes package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1118/2169HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
memes 1.7.0  (landing page)
Spencer Nystrom
Snapshot Date: 2023-02-23 09:40:21 -0000 (Thu, 23 Feb 2023)
git_url: https://git.bioconductor.org/packages/memes
git_branch: master
git_last_commit: 34e0e0f
git_last_commit_date: 2022-11-01 15:24:18 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: memes
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings memes_1.7.0.tar.gz
StartedAt: 2023-02-24 13:39:00 -0000 (Fri, 24 Feb 2023)
EndedAt: 2023-02-24 13:42:56 -0000 (Fri, 24 Feb 2023)
EllapsedTime: 236.3 seconds
RetCode: 0
Status:   OK  
CheckDir: memes.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings memes_1.7.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/memes.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘memes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘memes’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘memes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
add_sequence 8.678   0.42   9.117
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘core_ame.Rmd’ using ‘UTF-8’... OK
  ‘core_dreme.Rmd’ using ‘UTF-8’... OK
  ‘core_fimo.Rmd’ using ‘UTF-8’... OK
  ‘core_tomtom.Rmd’ using ‘UTF-8’... OK
  ‘install_guide.Rmd’ using ‘UTF-8’... OK
  ‘integrative_analysis.Rmd’ using ‘UTF-8’... OK
  ‘tidy_motifs.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

memes.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL memes
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘memes’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (memes)

Tests output


Example timings

memes.Rcheck/memes-Ex.timings

nameusersystemelapsed
add_sequence8.6780.4209.117
ame_compare_heatmap_methods1.1970.0921.288
check_meme_install0.7820.0120.795
drop_best_match0.0090.0000.009
example_ame0.0920.0080.100
example_ame_large0.0720.0000.072
force_best_match0.070.000.07
get_sequence0.5200.0240.565
has_duplicate_motifs0.2290.0200.251
importAme0.2670.0310.286
importDremeXML0.5570.0400.598
importFimo0.0630.0200.079
importMeme0.1450.0040.150
importStremeXML0.3130.0120.326
importTomTomXML1.4150.0801.495
meme_is_installed0.0690.0000.069
nest_tomtom0.0680.0000.068
plot_ame_heatmap0.530.000.53
plot_sequence_heatmap3.5110.1943.878
remove_duplicate_motifs0.0030.0000.002
runAme0.0660.0000.067
runDreme0.0660.0000.067
runFimo0.0670.0000.067
runMeme0.0660.0000.066
runTomTom0.0660.0000.066
update_best_match0.1310.0000.132
view_tomtom_hits1.2940.0071.303
write_fasta0.0020.0000.004