Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:35 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ASpli package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 86/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ASpli 2.9.0 (landing page) Estefania Mancini
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: ASpli |
Version: 2.9.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ASpli.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ASpli_2.9.0.tar.gz |
StartedAt: 2023-02-27 20:44:14 -0000 (Mon, 27 Feb 2023) |
EndedAt: 2023-02-27 21:07:07 -0000 (Mon, 27 Feb 2023) |
EllapsedTime: 1373.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ASpli.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ASpli.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ASpli_2.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ASpli.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘ASpli/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ASpli’ version ‘2.9.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ASpli’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ASpli-package 147.638 1.199 148.849 exportIntegratedSignals 79.130 0.270 79.420 integrateSignals 78.033 0.360 78.388 exportSplicingReports 77.668 0.367 78.032 splicingReport 77.310 0.304 77.610 jCounts-methods 77.130 0.244 77.370 jDUreport 76.888 0.320 77.203 gbDUreport-method 67.632 0.220 67.848 gbCounts 66.624 0.250 66.870 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘ASpli.Rnw’... OK OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘ASpli’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
name | user | system | elapsed | |
ASpli-package | 147.638 | 1.199 | 148.849 | |
DUreport | 0.001 | 0.000 | 0.000 | |
DUreport.norm | 0 | 0 | 0 | |
DUreport.offset | 0 | 0 | 0 | |
DUreportBinSplice-method | 0 | 0 | 0 | |
acc_AS | 0 | 0 | 0 | |
acc_DU | 0 | 0 | 0 | |
acc_counts | 0.000 | 0.000 | 0.001 | |
acc_features | 0.237 | 0.000 | 0.237 | |
binGenome | 4.859 | 0.032 | 4.891 | |
containsJunctions-function | 0 | 0 | 0 | |
example_data | 0 | 0 | 0 | |
exportIntegratedSignals | 79.13 | 0.27 | 79.42 | |
exportSplicingReports | 77.668 | 0.367 | 78.032 | |
filterDU-method | 0.000 | 0.001 | 0.000 | |
filterSignals | 0.000 | 0.001 | 0.000 | |
gbCounts | 66.624 | 0.250 | 66.870 | |
gbDUreport-method | 67.632 | 0.220 | 67.848 | |
getConditions-function | 0 | 0 | 0 | |
integrateSignals | 78.033 | 0.360 | 78.388 | |
jCounts-methods | 77.130 | 0.244 | 77.370 | |
jDUreport | 76.888 | 0.320 | 77.203 | |
junctionDUreport | 0 | 0 | 0 | |
loadBAM | 0 | 0 | 0 | |
mergeBinDUAS-method | 0 | 0 | 0 | |
plotBins | 0.000 | 0.000 | 0.001 | |
plotGenomicRegions | 0.000 | 0.000 | 0.001 | |
rds | 0.000 | 0.000 | 0.001 | |
splicingReport | 77.310 | 0.304 | 77.610 | |
subset-methods | 0.000 | 0.001 | 0.000 | |