Build/check report for BioC 3.17 - CHECK results for Basic4Cseq on kunpeng1

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng1	Linux (Ubuntu 22.04.1 LTS)	aarch64	R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"	4266
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings Basic4Cseq_1.35.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/Basic4Cseq.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘Basic4Cseq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Basic4Cseq’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Basic4Cseq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
readsToFragments 5.628  1.624   7.253
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘vignette.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL Basic4Cseq
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘Basic4Cseq’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Basic4Cseq)

Tests output

Example timings

name	user	system	elapsed
Data4Cseq-class	0.002	0.000	0.002
Data4Cseq	0.101	0.004	0.108
checkRestrictionEnzymeSequence	0	0	0
chooseNearCisFragments	0.010	0.004	0.013
createVirtualFragmentLibrary	0.001	0.000	0.000
drawDigestionFragmentHistogram	0.002	0.003	0.006
drawHeatmap	0	0	0
exportVisualizationFragmentData	0.000	0.000	0.001
getReadDistribution	0.206	0.036	0.243
giveEnzymeSequence	0.002	0.000	0.003
importVisualizationFragmentData	0.005	0.004	0.009
liverData	0.003	0.000	0.003
liverDataRaw	0.003	0.000	0.003
normalizeFragmentData	0.006	0.000	0.007
plotTransInteractions	0.001	0.000	0.001
prepare4CseqData	0.001	0.000	0.000
printBEDFragmentLibrary	0	0	0
printWigFile	0	0	0
readPointsOfInterestFile	0.001	0.002	0.003
readsToFragments	5.628	1.624	7.253
simulateDigestion	0.002	0.001	0.002
visualizeViewpoint	0.047	0.000	0.047

CHECK results for Basic4Cseq on kunpeng1

Summary

Command output

Installation output

Tests output

Example timings