Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:36 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the BubbleTree package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BubbleTree.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 227/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BubbleTree 2.29.0 (landing page) Todd Creasy
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: BubbleTree |
Version: 2.29.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:BubbleTree.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings BubbleTree_2.29.0.tar.gz |
StartedAt: 2023-02-27 22:21:50 -0000 (Mon, 27 Feb 2023) |
EndedAt: 2023-02-27 22:32:06 -0000 (Mon, 27 Feb 2023) |
EllapsedTime: 615.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BubbleTree.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:BubbleTree.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings BubbleTree_2.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/BubbleTree.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘BubbleTree/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BubbleTree’ version ‘2.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BubbleTree’ can be installed ... OK * checking installed package size ... NOTE installed size is 23.8Mb sub-directories of 1Mb or more: data 23.4Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ...Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE annoByOverlap,Annotate: no visible binding for global variable 'queryHits' Undefined global functions or variables: queryHits * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed makeRBD 36.751 0.356 37.108 heteroLociTrack 7.307 0.344 7.650 info 7.221 0.132 7.354 btpredict 6.201 0.212 6.413 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘BubbleTree-vignette.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.17-bioc/meat/BubbleTree.Rcheck/00check.log’ for details.
BubbleTree.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL BubbleTree ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘BubbleTree’ ... ** using staged installation Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BubbleTree)
BubbleTree.Rcheck/BubbleTree-Ex.timings
name | user | system | elapsed | |
Annotate | 0 | 0 | 0 | |
BTreePlotter | 0.334 | 0.032 | 0.366 | |
BTreePredictor | 0.022 | 0.004 | 0.026 | |
RBD | 1.087 | 0.012 | 1.100 | |
RscoreTrack | 0.651 | 0.008 | 0.659 | |
TrackPlotter | 0.000 | 0.000 | 0.001 | |
annoByGenesAndCyto | 0.700 | 0.056 | 0.756 | |
bafTrack | 0.311 | 0.036 | 0.347 | |
btcompare | 0.002 | 0.000 | 0.003 | |
btpredict | 6.201 | 0.212 | 6.413 | |
drawBTree | 0.358 | 0.012 | 0.370 | |
drawBubbles | 0.437 | 0.024 | 0.460 | |
drawFeatures | 1.552 | 0.072 | 1.625 | |
getTracks | 0.849 | 0.056 | 0.905 | |
heteroLociTrack | 7.307 | 0.344 | 7.650 | |
info | 7.221 | 0.132 | 7.354 | |
loadRBD | 0.043 | 0.000 | 0.043 | |
makeRBD | 36.751 | 0.356 | 37.108 | |
saveXLS | 0.349 | 0.038 | 0.424 | |
trackBTree | 0.394 | 0.004 | 0.399 | |
xyTrack | 0.291 | 0.012 | 0.303 | |