Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:38 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CONFESS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CONFESS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 394/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CONFESS 1.27.0 (landing page) Diana LOW
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | WARNINGS | |||||||||
Package: CONFESS |
Version: 1.27.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:CONFESS.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings CONFESS_1.27.0.tar.gz |
StartedAt: 2023-02-28 00:17:06 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 00:26:56 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 589.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: CONFESS.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:CONFESS.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings CONFESS_1.27.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/CONFESS.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘CONFESS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CONFESS’ version ‘1.27.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CONFESS’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘stats::BIC’ by ‘flowMerge::BIC’ when loading ‘CONFESS’ See ‘/home/biocbuild/bbs-3.17-bioc/meat/CONFESS.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Fluo_CV_prep 46.359 1.080 47.441 Fluo_adjustment 24.510 0.532 25.043 Fluo_modeling 13.574 0.239 13.815 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘vignette.Rmd’ using ‘UTF-8’... OK ‘vignette_tex.Rnw’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/home/biocbuild/bbs-3.17-bioc/meat/CONFESS.Rcheck/00check.log’ for details.
CONFESS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL CONFESS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘CONFESS’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘stats::BIC’ by ‘flowMerge::BIC’ when loading ‘CONFESS’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘stats::BIC’ by ‘flowMerge::BIC’ when loading ‘CONFESS’ ** testing if installed package can be loaded from final location Warning: replacing previous import ‘stats::BIC’ by ‘flowMerge::BIC’ when loading ‘CONFESS’ ** testing if installed package keeps a record of temporary installation path * DONE (CONFESS)
CONFESS.Rcheck/CONFESS-Ex.timings
name | user | system | elapsed | |
FluoSelection_byRun | 0.012 | 0.001 | 0.014 | |
Fluo_CV_modeling | 0 | 0 | 0 | |
Fluo_CV_prep | 46.359 | 1.080 | 47.441 | |
Fluo_adjustment | 24.510 | 0.532 | 25.043 | |
Fluo_inspection | 2.425 | 0.187 | 2.612 | |
Fluo_modeling | 13.574 | 0.239 | 13.815 | |
Fluo_ordering | 0.955 | 0.032 | 0.988 | |
LocationMatrix | 0.004 | 0.000 | 0.005 | |
cluster2outlier | 0.002 | 0.000 | 0.002 | |
createFluo | 0.009 | 0.000 | 0.009 | |
defineLocClusters | 0.054 | 0.000 | 0.058 | |
files | 0.002 | 0.000 | 0.003 | |
getFluo | 0.026 | 0.000 | 0.026 | |
getFluo_byRun | 0.054 | 0.000 | 0.054 | |
pathEstimator | 0.001 | 0.000 | 0.001 | |
readFiles | 0.017 | 0.000 | 0.017 | |
simcells | 1.330 | 0.028 | 1.358 | |
spotEstimator | 0 | 0 | 0 | |