| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:41 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the GEWIST package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GEWIST.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 799/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GEWIST 1.43.0  (landing page) Wei Q. Deng 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: GEWIST | 
| Version: 1.43.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GEWIST.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings GEWIST_1.43.0.tar.gz | 
| StartedAt: 2023-02-28 04:28:21 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 04:37:46 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 564.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: GEWIST.Rcheck | 
| Warnings: 0 | 
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GEWIST.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings GEWIST_1.43.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/GEWIST.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘GEWIST/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GEWIST’ version ‘1.43.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GEWIST’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘car’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
effectPDF: no visible global function definition for ‘dnorm’
effectPDF: no visible global function definition for ‘dbeta’
effectPDF: no visible global function definition for ‘dunif’
effectPDF: no visible global function definition for ‘dweibull’
gewistLevene: no visible global function definition for ‘rchisq’
gewistLevene: no visible global function definition for ‘rnorm’
gewistLevene: no visible global function definition for ‘pf’
Undefined global functions or variables:
  dbeta dnorm dunif dweibull pf rchisq rnorm
Consider adding
  importFrom("stats", "dbeta", "dnorm", "dunif", "dweibull", "pf",
             "rchisq", "rnorm")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
effectPDF 47.282  0.047   47.33
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘GEWIST.rnw’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/GEWIST.Rcheck/00check.log’
for details.
GEWIST.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GEWIST ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘GEWIST’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GEWIST)
GEWIST.Rcheck/GEWIST-Ex.timings
| name | user | system | elapsed | |
| effectPDF | 47.282 | 0.047 | 47.330 | |
| gewistLevene | 0.876 | 0.000 | 0.876 | |