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This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4266
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BUILD results for HPAStainR on kunpeng1


To the developers/maintainers of the HPAStainR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPAStainR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 914/2171HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HPAStainR 1.9.0  (landing page)
Tim O. Nieuwenhuis
Snapshot Date: 2023-02-27 07:53:22 -0000 (Mon, 27 Feb 2023)
git_url: https://git.bioconductor.org/packages/HPAStainR
git_branch: master
git_last_commit: fcb4d63
git_last_commit_date: 2022-11-01 15:22:33 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: HPAStainR
Version: 1.9.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPAStainR
StartedAt: 2023-02-27 14:33:18 -0000 (Mon, 27 Feb 2023)
EndedAt: 2023-02-27 14:33:49 -0000 (Mon, 27 Feb 2023)
EllapsedTime: 31.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPAStainR
###
##############################################################################
##############################################################################


* checking for file ‘HPAStainR/DESCRIPTION’ ... OK
* preparing ‘HPAStainR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HPAStainR.Rmd’ using rmarkdown
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5606031 bytes (5.3 MB)
==================================================
downloaded 5.3 MB

trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609172 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

Quitting from lines 89-90 (HPAStainR.Rmd) 
Error: processing vignette 'HPAStainR.Rmd' failed with diagnostics:
object 'hpaNormalTissue' not found
--- failed re-building ‘HPAStainR.Rmd’

SUMMARY: processing the following file failed:
  ‘HPAStainR.Rmd’

Error: Vignette re-building failed.
Execution halted