| Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 915/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz |
| StartedAt: 2023-02-28 05:50:21 -0000 (Tue, 28 Feb 2023) |
| EndedAt: 2023-02-28 06:06:35 -0000 (Tue, 28 Feb 2023) |
| EllapsedTime: 974.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 39.834 0.912 40.748
corr_plot 37.970 0.459 38.432
FSmethod 37.751 0.581 38.332
pred_ensembel 18.026 0.304 15.995
getFASTA 0.848 0.004 8.634
enrichfindP 0.421 0.033 16.104
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 109.789517
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.339109
iter 10 value 88.331805
final value 87.862820
converged
Fitting Repeat 3
# weights: 103
initial value 94.964940
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 104.240999
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 110.742329
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 103.891803
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 109.829226
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 114.799285
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 106.125547
iter 10 value 94.038442
final value 94.038251
converged
Fitting Repeat 5
# weights: 305
initial value 115.140186
final value 94.038251
converged
Fitting Repeat 1
# weights: 507
initial value 96.373988
iter 10 value 91.250977
iter 20 value 89.606791
iter 30 value 89.600055
final value 89.600000
converged
Fitting Repeat 2
# weights: 507
initial value 106.540886
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 116.685983
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 123.013742
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 100.451338
iter 10 value 93.618796
iter 20 value 91.644231
iter 30 value 91.317240
iter 40 value 91.313737
iter 50 value 91.309279
final value 91.309261
converged
Fitting Repeat 1
# weights: 103
initial value 113.593822
iter 10 value 93.794766
iter 20 value 85.306561
iter 30 value 84.204774
iter 40 value 84.007250
iter 50 value 83.941001
final value 83.940995
converged
Fitting Repeat 2
# weights: 103
initial value 98.223411
iter 10 value 94.059089
iter 20 value 94.056398
iter 30 value 92.240933
iter 40 value 91.820195
iter 50 value 86.123076
iter 60 value 84.989921
iter 70 value 83.673972
iter 80 value 83.323116
iter 90 value 83.229952
iter 100 value 82.996956
final value 82.996956
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.359178
iter 10 value 94.056980
iter 20 value 93.886545
iter 30 value 93.352917
iter 40 value 88.560878
iter 50 value 86.834107
iter 60 value 86.587961
iter 70 value 86.577683
final value 86.577674
converged
Fitting Repeat 4
# weights: 103
initial value 104.642079
iter 10 value 94.029674
iter 20 value 93.000932
iter 30 value 91.431398
iter 40 value 91.344949
iter 50 value 85.801094
iter 60 value 84.934593
iter 70 value 84.818679
iter 80 value 84.720722
iter 90 value 83.493638
iter 100 value 82.671470
final value 82.671470
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.666993
iter 10 value 93.997132
iter 20 value 91.012671
iter 30 value 89.327321
iter 40 value 86.029509
iter 50 value 84.534226
iter 60 value 83.817643
final value 83.800250
converged
Fitting Repeat 1
# weights: 305
initial value 120.358758
iter 10 value 94.003842
iter 20 value 91.176260
iter 30 value 87.779909
iter 40 value 84.568435
iter 50 value 82.914244
iter 60 value 82.274340
iter 70 value 81.939067
iter 80 value 81.718826
iter 90 value 81.577851
iter 100 value 81.503607
final value 81.503607
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.046518
iter 10 value 97.929802
iter 20 value 91.319367
iter 30 value 86.290148
iter 40 value 85.968289
iter 50 value 85.720547
iter 60 value 85.493584
iter 70 value 84.891633
iter 80 value 82.800102
iter 90 value 81.508801
iter 100 value 80.949605
final value 80.949605
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.309089
iter 10 value 91.680350
iter 20 value 86.259014
iter 30 value 85.776343
iter 40 value 83.471586
iter 50 value 82.367178
iter 60 value 82.068489
iter 70 value 81.874144
iter 80 value 81.744738
iter 90 value 81.719755
iter 100 value 81.590751
final value 81.590751
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.766733
iter 10 value 94.017769
iter 20 value 92.713266
iter 30 value 85.352117
iter 40 value 84.884048
iter 50 value 84.585915
iter 60 value 83.901358
iter 70 value 83.435244
iter 80 value 83.278436
iter 90 value 83.030221
iter 100 value 82.702541
final value 82.702541
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.094006
iter 10 value 94.069409
iter 20 value 86.088785
iter 30 value 85.020114
iter 40 value 84.086037
iter 50 value 82.194678
iter 60 value 81.825448
iter 70 value 81.384646
iter 80 value 81.265130
iter 90 value 81.193431
iter 100 value 81.105207
final value 81.105207
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.960659
iter 10 value 94.088279
iter 20 value 93.808710
iter 30 value 90.998767
iter 40 value 85.810421
iter 50 value 84.366128
iter 60 value 84.095767
iter 70 value 83.452159
iter 80 value 83.287202
iter 90 value 82.930369
iter 100 value 82.075558
final value 82.075558
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.154629
iter 10 value 93.880281
iter 20 value 87.883704
iter 30 value 85.332105
iter 40 value 83.549834
iter 50 value 83.068765
iter 60 value 82.874546
iter 70 value 82.532580
iter 80 value 82.265738
iter 90 value 81.908446
iter 100 value 81.769606
final value 81.769606
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 120.995217
iter 10 value 94.023555
iter 20 value 87.748192
iter 30 value 86.636795
iter 40 value 83.005603
iter 50 value 82.225475
iter 60 value 81.774823
iter 70 value 81.392180
iter 80 value 81.339696
iter 90 value 81.226475
iter 100 value 81.201966
final value 81.201966
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.221497
iter 10 value 93.955617
iter 20 value 89.316504
iter 30 value 87.590955
iter 40 value 86.119445
iter 50 value 83.973087
iter 60 value 83.601217
iter 70 value 83.386261
iter 80 value 83.219058
iter 90 value 83.128585
iter 100 value 82.746939
final value 82.746939
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.602549
iter 10 value 94.166311
iter 20 value 92.960530
iter 30 value 92.127885
iter 40 value 91.277265
iter 50 value 90.096840
iter 60 value 87.646624
iter 70 value 85.342982
iter 80 value 83.874640
iter 90 value 83.209869
iter 100 value 82.654212
final value 82.654212
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.527169
iter 10 value 94.054705
final value 94.052931
converged
Fitting Repeat 2
# weights: 103
initial value 94.877053
final value 94.054572
converged
Fitting Repeat 3
# weights: 103
initial value 96.725059
final value 94.054164
converged
Fitting Repeat 4
# weights: 103
initial value 101.205434
final value 94.054500
converged
Fitting Repeat 5
# weights: 103
initial value 94.658430
iter 10 value 91.945410
iter 20 value 91.927451
iter 30 value 91.927012
iter 40 value 88.568365
iter 50 value 88.557947
iter 60 value 88.556427
iter 70 value 88.395332
iter 80 value 88.394251
iter 90 value 88.383783
iter 100 value 87.617381
final value 87.617381
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 120.773561
iter 10 value 94.057762
iter 20 value 94.053147
iter 30 value 93.062120
iter 40 value 93.056967
final value 93.056962
converged
Fitting Repeat 2
# weights: 305
initial value 94.892151
iter 10 value 94.042955
iter 20 value 93.434230
iter 30 value 87.413639
iter 40 value 85.909069
iter 50 value 85.906281
iter 60 value 85.905712
iter 70 value 85.759633
iter 80 value 82.357405
iter 90 value 82.056391
iter 100 value 81.932979
final value 81.932979
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.665365
iter 10 value 94.058002
iter 20 value 93.568754
iter 30 value 88.171978
iter 40 value 88.164947
final value 88.164901
converged
Fitting Repeat 4
# weights: 305
initial value 96.874839
iter 10 value 92.447781
iter 20 value 91.787193
iter 30 value 91.629283
iter 40 value 91.628569
iter 50 value 91.627824
iter 60 value 87.273676
iter 70 value 85.541968
iter 80 value 85.536058
final value 85.535956
converged
Fitting Repeat 5
# weights: 305
initial value 106.160001
iter 10 value 94.057606
iter 20 value 93.956408
iter 30 value 90.158621
iter 40 value 89.051179
iter 50 value 87.298496
iter 60 value 87.288661
iter 70 value 85.642030
iter 80 value 85.504982
iter 90 value 85.474091
iter 100 value 85.464843
final value 85.464843
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.520258
iter 10 value 94.061479
iter 20 value 94.050162
iter 30 value 94.046390
iter 40 value 92.470734
iter 50 value 85.427018
iter 60 value 85.424170
iter 70 value 85.422754
iter 80 value 84.655034
iter 90 value 84.080841
iter 100 value 83.480333
final value 83.480333
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 99.683290
iter 10 value 93.590836
iter 20 value 90.012722
iter 30 value 86.973025
iter 40 value 83.500551
iter 50 value 81.985793
iter 60 value 81.886747
iter 70 value 81.886383
final value 81.885427
converged
Fitting Repeat 3
# weights: 507
initial value 103.275516
iter 10 value 94.061566
iter 20 value 93.925726
iter 30 value 91.441808
iter 40 value 86.011529
iter 50 value 85.358692
iter 60 value 85.351255
iter 70 value 85.347847
iter 80 value 85.334014
iter 90 value 82.522886
iter 100 value 81.847292
final value 81.847292
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.708623
iter 10 value 86.414618
iter 20 value 85.665091
iter 30 value 85.604283
iter 40 value 85.603071
iter 50 value 85.602253
iter 60 value 85.601315
iter 70 value 85.594748
iter 80 value 85.578065
iter 90 value 85.577850
iter 100 value 85.576400
final value 85.576400
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.267880
iter 10 value 93.999333
iter 20 value 93.992062
iter 30 value 93.413757
iter 40 value 91.083530
iter 50 value 91.013296
iter 60 value 90.574058
iter 70 value 90.390900
final value 90.390654
converged
Fitting Repeat 1
# weights: 103
initial value 102.804635
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.052878
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 106.250774
iter 10 value 94.485090
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.969390
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.708279
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 109.726242
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 98.350178
iter 10 value 94.354397
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 112.809853
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 116.218228
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 117.896775
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.962900
final value 94.354396
converged
Fitting Repeat 2
# weights: 507
initial value 98.030547
iter 10 value 94.488339
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 145.280759
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 115.668032
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.688241
iter 10 value 86.991906
iter 20 value 81.177827
iter 30 value 80.226816
iter 40 value 80.001237
iter 50 value 79.664035
iter 60 value 79.297616
iter 70 value 79.275713
iter 80 value 79.270308
iter 90 value 79.269573
final value 79.269532
converged
Fitting Repeat 1
# weights: 103
initial value 105.161684
iter 10 value 94.896006
iter 20 value 94.488414
iter 30 value 94.473692
iter 40 value 92.454871
iter 50 value 82.579604
iter 60 value 82.351776
iter 70 value 81.799440
iter 80 value 81.614824
iter 90 value 81.428418
iter 100 value 81.398982
final value 81.398982
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.368084
iter 10 value 93.756477
iter 20 value 86.170371
iter 30 value 84.857155
iter 40 value 82.344743
iter 50 value 80.712071
iter 60 value 80.391520
iter 70 value 79.986053
iter 80 value 79.812018
iter 90 value 79.719925
iter 100 value 79.687218
final value 79.687218
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 110.468043
iter 10 value 94.417568
iter 20 value 93.931277
iter 30 value 93.910016
iter 40 value 92.855917
iter 50 value 89.027625
iter 60 value 87.340033
iter 70 value 87.068886
iter 80 value 81.547366
iter 90 value 81.006360
iter 100 value 80.634456
final value 80.634456
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.302515
iter 10 value 94.448718
iter 20 value 87.591993
iter 30 value 83.184799
iter 40 value 82.392658
iter 50 value 81.634548
iter 60 value 81.584035
iter 70 value 81.470466
iter 80 value 81.408300
iter 90 value 81.399750
final value 81.399530
converged
Fitting Repeat 5
# weights: 103
initial value 97.292185
iter 10 value 94.488493
iter 20 value 93.961043
iter 30 value 93.925819
iter 40 value 93.279931
iter 50 value 87.007467
iter 60 value 84.153107
iter 70 value 83.932829
iter 80 value 83.899830
iter 90 value 83.842028
iter 100 value 83.611831
final value 83.611831
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 107.230884
iter 10 value 94.335595
iter 20 value 88.587596
iter 30 value 86.193974
iter 40 value 85.620340
iter 50 value 82.084150
iter 60 value 81.138576
iter 70 value 80.689507
iter 80 value 80.067281
iter 90 value 78.371874
iter 100 value 78.248634
final value 78.248634
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 131.284760
iter 10 value 94.486936
iter 20 value 94.181117
iter 30 value 89.846741
iter 40 value 88.574699
iter 50 value 86.201647
iter 60 value 82.952134
iter 70 value 82.447912
iter 80 value 80.174285
iter 90 value 79.270733
iter 100 value 78.609546
final value 78.609546
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.266952
iter 10 value 94.994767
iter 20 value 87.327850
iter 30 value 84.188814
iter 40 value 83.908415
iter 50 value 83.133233
iter 60 value 81.002111
iter 70 value 79.935398
iter 80 value 79.621040
iter 90 value 79.494572
iter 100 value 79.115818
final value 79.115818
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.243397
iter 10 value 94.368179
iter 20 value 90.233120
iter 30 value 85.564903
iter 40 value 84.900847
iter 50 value 83.117635
iter 60 value 80.700119
iter 70 value 79.692655
iter 80 value 79.436273
iter 90 value 79.278539
iter 100 value 79.194793
final value 79.194793
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.967913
iter 10 value 94.497463
iter 20 value 93.023798
iter 30 value 87.784959
iter 40 value 84.965424
iter 50 value 81.865952
iter 60 value 81.040357
iter 70 value 80.688857
iter 80 value 80.350003
iter 90 value 79.935222
iter 100 value 79.299881
final value 79.299881
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.770015
iter 10 value 90.143459
iter 20 value 86.998346
iter 30 value 86.681893
iter 40 value 86.547398
iter 50 value 85.264871
iter 60 value 81.520457
iter 70 value 79.943564
iter 80 value 79.538175
iter 90 value 79.013568
iter 100 value 78.415399
final value 78.415399
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.796596
iter 10 value 94.502339
iter 20 value 92.277168
iter 30 value 82.071946
iter 40 value 81.658685
iter 50 value 81.228265
iter 60 value 80.060130
iter 70 value 79.392344
iter 80 value 79.139032
iter 90 value 78.752051
iter 100 value 78.117469
final value 78.117469
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 124.691112
iter 10 value 93.439662
iter 20 value 85.277292
iter 30 value 83.120523
iter 40 value 82.158807
iter 50 value 81.910720
iter 60 value 81.003390
iter 70 value 80.727983
iter 80 value 79.971301
iter 90 value 78.958133
iter 100 value 78.639430
final value 78.639430
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.897224
iter 10 value 83.821689
iter 20 value 79.818310
iter 30 value 78.818821
iter 40 value 78.229660
iter 50 value 77.981714
iter 60 value 77.914970
iter 70 value 77.694464
iter 80 value 77.522500
iter 90 value 77.443714
iter 100 value 77.427832
final value 77.427832
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.713191
iter 10 value 94.351969
iter 20 value 85.891668
iter 30 value 84.864320
iter 40 value 82.672199
iter 50 value 80.573457
iter 60 value 80.045728
iter 70 value 79.851751
iter 80 value 79.396043
iter 90 value 79.052799
iter 100 value 78.829477
final value 78.829477
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.139742
final value 94.356166
converged
Fitting Repeat 2
# weights: 103
initial value 100.783681
iter 10 value 94.485748
iter 20 value 94.484225
iter 20 value 94.484224
iter 20 value 94.484224
final value 94.484224
converged
Fitting Repeat 3
# weights: 103
initial value 94.803533
final value 94.485967
converged
Fitting Repeat 4
# weights: 103
initial value 99.241501
final value 94.485690
converged
Fitting Repeat 5
# weights: 103
initial value 96.844345
iter 10 value 94.485826
iter 20 value 94.298284
iter 30 value 89.284888
iter 40 value 88.288202
iter 50 value 86.589732
iter 60 value 82.227984
iter 70 value 81.965511
iter 80 value 81.958700
iter 90 value 81.851731
iter 100 value 81.807895
final value 81.807895
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 95.821219
iter 10 value 94.488630
iter 20 value 94.466263
iter 30 value 89.066698
iter 40 value 80.660548
iter 50 value 80.576704
iter 60 value 80.553954
iter 70 value 80.547475
iter 80 value 80.539992
iter 90 value 80.528656
iter 100 value 80.520814
final value 80.520814
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.404992
iter 10 value 94.489260
iter 20 value 94.469672
iter 30 value 88.230813
iter 40 value 82.168843
iter 50 value 81.057798
iter 60 value 81.052948
final value 81.052499
converged
Fitting Repeat 3
# weights: 305
initial value 94.757408
iter 10 value 88.755673
iter 20 value 87.623490
iter 30 value 87.596816
iter 40 value 87.511724
iter 50 value 86.996696
iter 60 value 86.987812
final value 86.987322
converged
Fitting Repeat 4
# weights: 305
initial value 96.845498
iter 10 value 94.489110
iter 20 value 94.475451
iter 30 value 84.116062
iter 40 value 82.512914
iter 50 value 82.086890
iter 60 value 81.990830
iter 70 value 81.987796
iter 80 value 81.987713
final value 81.987165
converged
Fitting Repeat 5
# weights: 305
initial value 97.543167
iter 10 value 94.358871
iter 20 value 94.202036
iter 30 value 93.873166
iter 40 value 93.871657
iter 40 value 93.871656
iter 40 value 93.871656
final value 93.871656
converged
Fitting Repeat 1
# weights: 507
initial value 97.248154
iter 10 value 94.321177
iter 20 value 94.316408
iter 30 value 94.308082
final value 94.307592
converged
Fitting Repeat 2
# weights: 507
initial value 95.953988
iter 10 value 94.319807
iter 20 value 90.181180
iter 30 value 87.090098
iter 40 value 87.063057
iter 50 value 86.170888
final value 86.018947
converged
Fitting Repeat 3
# weights: 507
initial value 98.787563
iter 10 value 94.492092
iter 20 value 94.431033
iter 30 value 93.865271
iter 40 value 93.839129
iter 50 value 93.838975
final value 93.838960
converged
Fitting Repeat 4
# weights: 507
initial value 149.123773
iter 10 value 96.406168
iter 20 value 94.012531
iter 30 value 94.005346
iter 40 value 93.010498
iter 50 value 87.479516
iter 60 value 83.534902
iter 70 value 82.808288
iter 80 value 82.805080
final value 82.805013
converged
Fitting Repeat 5
# weights: 507
initial value 97.650866
iter 10 value 94.155979
iter 20 value 92.227313
iter 30 value 92.205721
iter 40 value 92.005799
iter 50 value 91.978605
iter 60 value 91.972615
iter 60 value 91.972615
final value 91.972612
converged
Fitting Repeat 1
# weights: 103
initial value 94.781615
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.166606
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 112.023196
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.074782
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.422817
final value 94.275362
converged
Fitting Repeat 1
# weights: 305
initial value 103.628102
final value 94.088889
converged
Fitting Repeat 2
# weights: 305
initial value 122.838604
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 105.329776
iter 10 value 86.990045
iter 20 value 85.600786
final value 85.600081
converged
Fitting Repeat 4
# weights: 305
initial value 107.166084
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 107.542245
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.858269
iter 10 value 87.883525
iter 20 value 86.137182
iter 30 value 86.133349
final value 86.133335
converged
Fitting Repeat 2
# weights: 507
initial value 97.734915
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 97.544190
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 100.334169
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.070600
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 96.172434
iter 10 value 94.288755
iter 20 value 91.240264
iter 30 value 84.230823
iter 40 value 81.561998
iter 50 value 80.955294
iter 60 value 80.320300
iter 70 value 79.978318
iter 80 value 79.972317
iter 90 value 79.927756
iter 100 value 79.897071
final value 79.897071
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.689688
iter 10 value 94.421163
iter 20 value 94.356649
iter 30 value 86.902226
iter 40 value 82.877730
iter 50 value 81.875854
iter 60 value 81.475960
iter 70 value 80.496176
iter 80 value 79.973963
final value 79.973061
converged
Fitting Repeat 3
# weights: 103
initial value 109.674891
iter 10 value 94.486558
iter 20 value 94.213869
iter 30 value 94.078687
iter 40 value 92.550766
iter 50 value 83.910727
iter 60 value 82.715343
iter 70 value 81.614004
iter 80 value 81.292495
iter 90 value 81.265380
iter 100 value 80.382764
final value 80.382764
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 110.961813
iter 10 value 94.440632
iter 20 value 92.689302
iter 30 value 83.884640
iter 40 value 83.516053
iter 50 value 82.280755
iter 60 value 81.738535
iter 70 value 81.492682
iter 80 value 81.369956
iter 90 value 81.342230
iter 100 value 81.278130
final value 81.278130
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 115.273301
iter 10 value 94.429359
iter 20 value 93.049299
iter 30 value 91.537487
iter 40 value 85.630254
iter 50 value 84.188297
iter 60 value 81.953552
iter 70 value 80.808959
iter 80 value 80.774365
iter 90 value 80.764204
iter 100 value 80.049626
final value 80.049626
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 113.845471
iter 10 value 94.822860
iter 20 value 94.286102
iter 30 value 88.710383
iter 40 value 85.432836
iter 50 value 83.038736
iter 60 value 82.722054
iter 70 value 81.566324
iter 80 value 79.869802
iter 90 value 79.082945
iter 100 value 78.497669
final value 78.497669
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.014702
iter 10 value 94.746723
iter 20 value 83.416683
iter 30 value 81.102103
iter 40 value 80.820070
iter 50 value 80.776735
iter 60 value 80.730995
iter 70 value 80.252772
iter 80 value 80.010604
iter 90 value 79.316195
iter 100 value 78.717664
final value 78.717664
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.219669
iter 10 value 93.870025
iter 20 value 86.618206
iter 30 value 81.482082
iter 40 value 80.107658
iter 50 value 79.203088
iter 60 value 78.834169
iter 70 value 78.358516
iter 80 value 78.336954
iter 90 value 78.335661
final value 78.335137
converged
Fitting Repeat 4
# weights: 305
initial value 106.656617
iter 10 value 94.563000
iter 20 value 94.257172
iter 30 value 83.286441
iter 40 value 82.029151
iter 50 value 81.252264
iter 60 value 80.483336
iter 70 value 80.041211
iter 80 value 78.995353
iter 90 value 78.281737
iter 100 value 78.190993
final value 78.190993
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.322030
iter 10 value 94.420234
iter 20 value 87.223467
iter 30 value 85.430947
iter 40 value 82.532812
iter 50 value 81.961929
iter 60 value 80.723320
iter 70 value 80.225155
iter 80 value 79.374561
iter 90 value 78.636662
iter 100 value 78.241737
final value 78.241737
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.572899
iter 10 value 94.835470
iter 20 value 92.599615
iter 30 value 87.433463
iter 40 value 83.285709
iter 50 value 81.999680
iter 60 value 80.944519
iter 70 value 80.165144
iter 80 value 79.514665
iter 90 value 78.923948
iter 100 value 78.530683
final value 78.530683
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.627533
iter 10 value 94.923941
iter 20 value 91.446058
iter 30 value 86.376481
iter 40 value 82.207171
iter 50 value 80.474635
iter 60 value 78.622867
iter 70 value 78.226560
iter 80 value 77.810384
iter 90 value 77.557504
iter 100 value 77.469012
final value 77.469012
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.480687
iter 10 value 97.060125
iter 20 value 91.977523
iter 30 value 90.942467
iter 40 value 84.777272
iter 50 value 84.101169
iter 60 value 79.297726
iter 70 value 78.093405
iter 80 value 77.811779
iter 90 value 77.686802
iter 100 value 77.593811
final value 77.593811
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.252886
iter 10 value 93.632753
iter 20 value 87.601752
iter 30 value 83.917828
iter 40 value 82.574163
iter 50 value 80.169198
iter 60 value 79.298242
iter 70 value 78.555714
iter 80 value 78.291499
iter 90 value 78.117793
iter 100 value 77.953564
final value 77.953564
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.368723
iter 10 value 94.066112
iter 20 value 84.290393
iter 30 value 83.098229
iter 40 value 82.687272
iter 50 value 81.396623
iter 60 value 81.090552
iter 70 value 80.984886
iter 80 value 80.644204
iter 90 value 79.903671
iter 100 value 79.628203
final value 79.628203
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.382907
final value 94.485928
converged
Fitting Repeat 2
# weights: 103
initial value 101.523006
final value 94.485916
converged
Fitting Repeat 3
# weights: 103
initial value 95.741175
final value 94.485986
converged
Fitting Repeat 4
# weights: 103
initial value 104.159246
final value 94.485875
converged
Fitting Repeat 5
# weights: 103
initial value 96.573820
iter 10 value 94.090703
iter 20 value 94.089246
iter 30 value 92.076385
iter 40 value 88.677973
iter 50 value 88.675416
iter 60 value 88.350397
iter 70 value 88.342324
iter 80 value 85.238117
iter 90 value 85.237681
iter 100 value 85.237323
final value 85.237323
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.871790
iter 10 value 94.280303
iter 20 value 94.275799
iter 30 value 82.865861
iter 40 value 81.904475
iter 50 value 81.653635
final value 81.653603
converged
Fitting Repeat 2
# weights: 305
initial value 112.353187
iter 10 value 94.489236
iter 20 value 94.401485
final value 94.112707
converged
Fitting Repeat 3
# weights: 305
initial value 102.352840
iter 10 value 94.487110
iter 20 value 94.426385
iter 30 value 94.053398
iter 40 value 93.666484
iter 50 value 81.913097
iter 60 value 81.657418
iter 70 value 81.653794
final value 81.653620
converged
Fitting Repeat 4
# weights: 305
initial value 96.899286
iter 10 value 81.026347
iter 20 value 80.507872
iter 30 value 79.494412
iter 40 value 79.138211
iter 50 value 78.968176
iter 60 value 78.964745
iter 70 value 78.926998
iter 80 value 78.874310
iter 90 value 78.845113
iter 100 value 78.844489
final value 78.844489
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.859617
iter 10 value 94.489035
iter 20 value 94.479318
iter 30 value 84.926316
final value 83.229986
converged
Fitting Repeat 1
# weights: 507
initial value 103.213442
iter 10 value 94.482314
iter 20 value 94.468781
iter 30 value 93.593633
iter 40 value 83.390170
iter 50 value 83.266955
iter 60 value 83.266267
final value 83.266218
converged
Fitting Repeat 2
# weights: 507
initial value 108.468749
iter 10 value 94.492503
iter 20 value 94.470710
iter 30 value 93.125566
iter 40 value 85.330296
iter 50 value 83.248035
iter 60 value 83.247862
iter 70 value 81.882755
iter 80 value 81.634356
iter 90 value 81.633705
iter 100 value 81.633067
final value 81.633067
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 97.934527
iter 10 value 92.941943
iter 20 value 81.885702
iter 30 value 81.737576
iter 40 value 81.639034
iter 50 value 81.638687
iter 60 value 81.174648
iter 70 value 80.984423
iter 80 value 80.980846
iter 90 value 80.757906
final value 80.673378
converged
Fitting Repeat 4
# weights: 507
initial value 104.208668
iter 10 value 94.314162
iter 20 value 93.879880
iter 30 value 84.094247
iter 40 value 82.848093
iter 50 value 80.961141
iter 60 value 80.726108
final value 80.721740
converged
Fitting Repeat 5
# weights: 507
initial value 94.580766
iter 10 value 94.414050
iter 20 value 94.298820
iter 30 value 94.280616
iter 40 value 94.267127
iter 50 value 86.227930
iter 60 value 85.242928
iter 70 value 82.173434
iter 80 value 78.312915
iter 90 value 77.866323
iter 100 value 77.794276
final value 77.794276
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.994333
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.760341
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.245118
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.113768
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.674846
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.273018
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 95.329382
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.204894
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 107.055629
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.724211
iter 10 value 86.095510
iter 20 value 85.988325
final value 85.988096
converged
Fitting Repeat 1
# weights: 507
initial value 102.258384
final value 94.484210
converged
Fitting Repeat 2
# weights: 507
initial value 126.706139
final value 94.400000
converged
Fitting Repeat 3
# weights: 507
initial value 116.818276
final value 94.467391
converged
Fitting Repeat 4
# weights: 507
initial value 104.136793
iter 10 value 94.022728
iter 10 value 94.022727
iter 10 value 94.022727
final value 94.022727
converged
Fitting Repeat 5
# weights: 507
initial value 95.218862
final value 94.430233
converged
Fitting Repeat 1
# weights: 103
initial value 99.436770
iter 10 value 94.480123
iter 20 value 90.390015
iter 30 value 89.078612
iter 40 value 87.455972
iter 50 value 84.889153
iter 60 value 84.367160
iter 70 value 84.300746
final value 84.300744
converged
Fitting Repeat 2
# weights: 103
initial value 100.025302
iter 10 value 91.824736
iter 20 value 86.392032
iter 30 value 85.970593
iter 40 value 85.818347
iter 50 value 84.505822
iter 60 value 83.957212
iter 70 value 83.783441
iter 80 value 83.383895
iter 90 value 83.230721
final value 83.228844
converged
Fitting Repeat 3
# weights: 103
initial value 102.804204
iter 10 value 94.384081
iter 20 value 88.338945
iter 30 value 86.612869
iter 40 value 85.703813
iter 50 value 84.853667
iter 60 value 84.682738
final value 84.677997
converged
Fitting Repeat 4
# weights: 103
initial value 104.143075
iter 10 value 94.489467
iter 20 value 93.642341
iter 30 value 87.115730
iter 40 value 84.699273
iter 50 value 83.631137
iter 60 value 83.521220
iter 70 value 83.435108
iter 80 value 83.305832
iter 90 value 83.228862
final value 83.228844
converged
Fitting Repeat 5
# weights: 103
initial value 97.582903
iter 10 value 91.874894
iter 20 value 91.409952
iter 30 value 90.907885
iter 40 value 90.691137
final value 90.689153
converged
Fitting Repeat 1
# weights: 305
initial value 104.668937
iter 10 value 94.160108
iter 20 value 89.530944
iter 30 value 85.564545
iter 40 value 84.611674
iter 50 value 83.664862
iter 60 value 82.378357
iter 70 value 81.278475
iter 80 value 80.934222
iter 90 value 80.415589
iter 100 value 80.143832
final value 80.143832
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.739809
iter 10 value 94.054341
iter 20 value 91.795486
iter 30 value 91.284502
iter 40 value 90.914236
iter 50 value 90.219405
iter 60 value 85.722713
iter 70 value 83.374237
iter 80 value 81.381389
iter 90 value 81.181780
iter 100 value 80.912965
final value 80.912965
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.811013
iter 10 value 94.508467
iter 20 value 94.494111
iter 30 value 92.946610
iter 40 value 89.166965
iter 50 value 87.825229
iter 60 value 87.075965
iter 70 value 85.284892
iter 80 value 84.808964
iter 90 value 82.784420
iter 100 value 82.180151
final value 82.180151
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.437479
iter 10 value 94.305065
iter 20 value 89.985563
iter 30 value 89.128088
iter 40 value 85.858005
iter 50 value 84.168152
iter 60 value 82.913205
iter 70 value 81.072399
iter 80 value 80.413392
iter 90 value 80.249136
iter 100 value 80.190487
final value 80.190487
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 139.265653
iter 10 value 94.734066
iter 20 value 92.749935
iter 30 value 88.812871
iter 40 value 87.982482
iter 50 value 85.527460
iter 60 value 84.811567
iter 70 value 84.556825
iter 80 value 84.421619
iter 90 value 83.182511
iter 100 value 81.661726
final value 81.661726
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 123.530331
iter 10 value 94.436221
iter 20 value 85.969000
iter 30 value 84.424096
iter 40 value 83.186438
iter 50 value 81.487099
iter 60 value 80.662938
iter 70 value 80.382926
iter 80 value 80.284733
iter 90 value 80.145252
iter 100 value 80.070768
final value 80.070768
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 122.040745
iter 10 value 93.742769
iter 20 value 92.035927
iter 30 value 87.170510
iter 40 value 84.525837
iter 50 value 82.695550
iter 60 value 81.819797
iter 70 value 81.090270
iter 80 value 80.866565
iter 90 value 80.664169
iter 100 value 80.613960
final value 80.613960
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.446293
iter 10 value 93.595550
iter 20 value 86.803714
iter 30 value 85.477122
iter 40 value 83.384252
iter 50 value 82.149435
iter 60 value 81.583185
iter 70 value 81.168819
iter 80 value 80.297440
iter 90 value 80.118038
iter 100 value 80.045198
final value 80.045198
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 141.108606
iter 10 value 96.156120
iter 20 value 93.581164
iter 30 value 86.708746
iter 40 value 83.559380
iter 50 value 83.259004
iter 60 value 82.477093
iter 70 value 82.464398
iter 80 value 82.087805
iter 90 value 81.280733
iter 100 value 80.825314
final value 80.825314
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.846825
iter 10 value 94.415169
iter 20 value 93.848843
iter 30 value 85.648503
iter 40 value 85.299087
iter 50 value 84.511338
iter 60 value 83.361235
iter 70 value 82.234003
iter 80 value 80.967501
iter 90 value 80.478900
iter 100 value 80.237792
final value 80.237792
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.108487
final value 94.485747
converged
Fitting Repeat 2
# weights: 103
initial value 101.908643
iter 10 value 94.485764
iter 20 value 94.484177
iter 30 value 92.265561
iter 40 value 91.948011
iter 50 value 91.946074
iter 60 value 91.944520
iter 70 value 91.944152
iter 80 value 91.795145
iter 90 value 91.209943
iter 100 value 90.945517
final value 90.945517
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.826808
iter 10 value 94.486015
final value 94.484367
converged
Fitting Repeat 4
# weights: 103
initial value 101.189813
iter 10 value 94.485602
iter 20 value 94.484245
iter 30 value 94.235375
iter 40 value 94.113841
final value 94.113458
converged
Fitting Repeat 5
# weights: 103
initial value 104.856701
iter 10 value 94.486000
final value 94.484339
converged
Fitting Repeat 1
# weights: 305
initial value 101.946393
iter 10 value 94.489220
iter 20 value 94.484683
iter 30 value 87.880946
iter 40 value 86.984385
iter 50 value 84.493956
iter 60 value 84.468806
iter 70 value 84.189795
iter 80 value 83.233683
iter 90 value 82.548950
iter 100 value 82.547702
final value 82.547702
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 112.313413
iter 10 value 94.434793
iter 20 value 94.406995
iter 30 value 93.713676
iter 40 value 87.957787
iter 50 value 84.107606
iter 60 value 84.056827
iter 70 value 83.208755
iter 80 value 83.157839
final value 83.157401
converged
Fitting Repeat 3
# weights: 305
initial value 100.810273
iter 10 value 94.471973
iter 20 value 94.306954
iter 30 value 94.043526
iter 40 value 94.037941
iter 50 value 94.023403
final value 94.023397
converged
Fitting Repeat 4
# weights: 305
initial value 95.142633
iter 10 value 94.454407
iter 20 value 94.449694
iter 30 value 94.108917
iter 40 value 86.137516
iter 50 value 86.111552
iter 60 value 86.111251
iter 70 value 84.639228
iter 80 value 84.622845
final value 84.622822
converged
Fitting Repeat 5
# weights: 305
initial value 102.312264
iter 10 value 94.489180
iter 20 value 94.470293
iter 30 value 85.039192
final value 84.884545
converged
Fitting Repeat 1
# weights: 507
initial value 93.900599
iter 10 value 93.255265
iter 20 value 93.254524
iter 30 value 93.226213
iter 40 value 93.178147
iter 50 value 93.177392
iter 60 value 93.175256
final value 93.175084
converged
Fitting Repeat 2
# weights: 507
initial value 104.543266
iter 10 value 94.476410
iter 20 value 94.468870
final value 94.467635
converged
Fitting Repeat 3
# weights: 507
initial value 108.688207
iter 10 value 91.429752
iter 20 value 91.156844
iter 30 value 91.145272
iter 40 value 91.144657
iter 50 value 90.852030
iter 60 value 84.277383
iter 70 value 83.504450
iter 80 value 83.503551
iter 90 value 82.907500
iter 100 value 82.248125
final value 82.248125
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.397076
iter 10 value 94.054648
iter 20 value 90.094828
iter 30 value 86.556841
iter 40 value 86.479271
iter 50 value 86.475886
iter 60 value 86.475405
iter 70 value 84.669378
iter 80 value 84.024846
iter 90 value 83.997023
iter 100 value 83.980001
final value 83.980001
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.212568
iter 10 value 94.067293
iter 20 value 94.052930
iter 30 value 94.051709
iter 40 value 86.715213
iter 50 value 86.703178
iter 60 value 86.693724
iter 70 value 84.624622
iter 80 value 83.940847
iter 90 value 83.774828
final value 83.771526
converged
Fitting Repeat 1
# weights: 103
initial value 96.594140
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 99.423722
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.651824
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 101.365821
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.446829
final value 93.912644
converged
Fitting Repeat 1
# weights: 305
initial value 98.973568
final value 94.052908
converged
Fitting Repeat 2
# weights: 305
initial value 99.150436
iter 10 value 92.724020
final value 92.696797
converged
Fitting Repeat 3
# weights: 305
initial value 104.433494
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 112.313065
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 112.458331
iter 10 value 93.226191
iter 10 value 93.226190
iter 10 value 93.226190
final value 93.226190
converged
Fitting Repeat 1
# weights: 507
initial value 109.783189
iter 10 value 92.945415
final value 92.945355
converged
Fitting Repeat 2
# weights: 507
initial value 100.145649
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 95.924442
iter 10 value 92.945501
final value 92.945355
converged
Fitting Repeat 4
# weights: 507
initial value 95.631115
final value 92.945356
converged
Fitting Repeat 5
# weights: 507
initial value 95.461049
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 102.922140
iter 10 value 94.055311
iter 20 value 93.590101
iter 30 value 93.242049
iter 40 value 93.236073
iter 50 value 92.681814
iter 60 value 85.235786
iter 70 value 84.910411
iter 80 value 84.374783
iter 90 value 84.098018
iter 100 value 83.908019
final value 83.908019
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.810435
iter 10 value 93.985097
iter 20 value 93.237902
iter 30 value 93.231096
iter 40 value 92.856376
iter 50 value 90.653607
iter 60 value 89.320958
iter 70 value 89.209601
iter 80 value 87.459854
iter 90 value 86.304214
iter 100 value 84.500199
final value 84.500199
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 105.034067
iter 10 value 94.056735
iter 20 value 88.486472
iter 30 value 86.866371
iter 40 value 86.089564
iter 50 value 85.759139
iter 60 value 85.728721
iter 70 value 85.722588
iter 80 value 85.720188
iter 90 value 85.621363
final value 85.619739
converged
Fitting Repeat 4
# weights: 103
initial value 105.906849
iter 10 value 87.517728
iter 20 value 86.020562
iter 30 value 85.832961
iter 40 value 85.797299
iter 50 value 85.629588
iter 60 value 85.619761
final value 85.619742
converged
Fitting Repeat 5
# weights: 103
initial value 97.223970
iter 10 value 94.072499
iter 20 value 93.670269
iter 30 value 93.245552
iter 40 value 92.178192
iter 50 value 85.890340
iter 60 value 84.952650
iter 70 value 84.416780
iter 80 value 84.269654
iter 90 value 84.129987
iter 100 value 84.007624
final value 84.007624
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 111.066108
iter 10 value 93.076097
iter 20 value 89.017538
iter 30 value 86.530354
iter 40 value 85.674691
iter 50 value 85.006496
iter 60 value 84.954948
iter 70 value 84.905583
iter 80 value 84.466018
iter 90 value 83.530877
iter 100 value 82.584960
final value 82.584960
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.449740
iter 10 value 92.849131
iter 20 value 88.855225
iter 30 value 87.458583
iter 40 value 87.072923
iter 50 value 86.682631
iter 60 value 85.926273
iter 70 value 84.092782
iter 80 value 83.630342
iter 90 value 83.469657
iter 100 value 83.282548
final value 83.282548
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.307706
iter 10 value 94.023195
iter 20 value 86.582251
iter 30 value 84.900819
iter 40 value 84.410177
iter 50 value 84.055014
iter 60 value 83.433147
iter 70 value 83.074347
iter 80 value 82.971102
iter 90 value 82.609859
iter 100 value 82.305272
final value 82.305272
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.624018
iter 10 value 93.518715
iter 20 value 89.677224
iter 30 value 83.863509
iter 40 value 83.295250
iter 50 value 82.793890
iter 60 value 82.665675
iter 70 value 82.592496
iter 80 value 82.579745
iter 90 value 82.572568
iter 100 value 82.552148
final value 82.552148
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.384233
iter 10 value 94.068156
iter 20 value 88.851059
iter 30 value 86.316769
iter 40 value 85.756608
iter 50 value 85.318148
iter 60 value 85.105847
iter 70 value 84.844337
iter 80 value 84.768377
iter 90 value 84.766216
iter 100 value 84.764536
final value 84.764536
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.539754
iter 10 value 93.542772
iter 20 value 92.677785
iter 30 value 90.476765
iter 40 value 90.126283
iter 50 value 89.099598
iter 60 value 88.972790
iter 70 value 88.518493
iter 80 value 86.319617
iter 90 value 84.805242
iter 100 value 84.545405
final value 84.545405
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.402545
iter 10 value 96.020160
iter 20 value 91.807984
iter 30 value 89.979111
iter 40 value 85.333400
iter 50 value 84.677068
iter 60 value 84.329968
iter 70 value 84.202423
iter 80 value 83.789775
iter 90 value 83.068426
iter 100 value 82.615727
final value 82.615727
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.160501
iter 10 value 93.940901
iter 20 value 89.088261
iter 30 value 87.815627
iter 40 value 86.536777
iter 50 value 85.669700
iter 60 value 84.011820
iter 70 value 83.709969
iter 80 value 82.917777
iter 90 value 82.698560
iter 100 value 82.632465
final value 82.632465
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.738857
iter 10 value 93.657877
iter 20 value 92.386009
iter 30 value 87.751285
iter 40 value 86.054992
iter 50 value 85.395390
iter 60 value 84.649158
iter 70 value 83.387350
iter 80 value 82.755008
iter 90 value 82.435745
iter 100 value 82.284665
final value 82.284665
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.227869
iter 10 value 93.935947
iter 20 value 89.278491
iter 30 value 86.911262
iter 40 value 86.288134
iter 50 value 84.642012
iter 60 value 84.055534
iter 70 value 83.935070
iter 80 value 83.690584
iter 90 value 83.115439
iter 100 value 82.635693
final value 82.635693
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.457346
final value 94.054551
converged
Fitting Repeat 2
# weights: 103
initial value 96.135449
iter 10 value 92.947465
iter 20 value 92.946435
final value 92.945830
converged
Fitting Repeat 3
# weights: 103
initial value 103.312733
iter 10 value 92.925596
iter 20 value 92.761609
iter 30 value 92.760435
final value 92.760033
converged
Fitting Repeat 4
# weights: 103
initial value 101.752543
final value 94.054487
converged
Fitting Repeat 5
# weights: 103
initial value 105.334134
final value 94.054700
converged
Fitting Repeat 1
# weights: 305
initial value 128.303986
iter 10 value 94.061708
iter 20 value 94.055566
iter 30 value 92.700708
iter 40 value 89.013639
iter 50 value 88.157000
iter 60 value 88.154339
iter 70 value 86.046331
iter 80 value 86.021846
iter 90 value 86.016187
iter 100 value 86.015274
final value 86.015274
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.288419
iter 10 value 94.058050
iter 20 value 94.052927
final value 94.052924
converged
Fitting Repeat 3
# weights: 305
initial value 96.746335
iter 10 value 94.057877
iter 20 value 94.011329
iter 30 value 89.090420
iter 40 value 89.084328
iter 50 value 88.518839
iter 60 value 88.421647
iter 70 value 85.871963
iter 80 value 85.484864
iter 90 value 85.482849
final value 85.481814
converged
Fitting Repeat 4
# weights: 305
initial value 94.533944
iter 10 value 92.950621
iter 20 value 92.947476
iter 30 value 92.760296
final value 92.760132
converged
Fitting Repeat 5
# weights: 305
initial value 102.098393
iter 10 value 92.951654
iter 20 value 92.950721
iter 30 value 92.946388
iter 40 value 92.762589
final value 92.760578
converged
Fitting Repeat 1
# weights: 507
initial value 122.931311
iter 10 value 92.968945
iter 20 value 92.963917
iter 30 value 92.679916
iter 40 value 90.998734
iter 50 value 86.538393
iter 60 value 86.497240
iter 70 value 86.492655
iter 80 value 86.489703
iter 90 value 86.488241
iter 100 value 86.485231
final value 86.485231
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.553256
iter 10 value 92.954570
iter 20 value 92.950275
iter 30 value 91.989750
iter 40 value 85.783655
iter 50 value 84.926916
iter 60 value 84.923999
iter 70 value 84.923043
iter 80 value 84.154534
iter 90 value 83.968694
iter 100 value 83.528301
final value 83.528301
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 97.192225
iter 10 value 94.061547
iter 20 value 94.035819
iter 30 value 93.502344
iter 40 value 89.902351
iter 50 value 89.836947
iter 60 value 89.833956
iter 70 value 89.831016
iter 80 value 89.821943
iter 90 value 89.821268
iter 100 value 89.690854
final value 89.690854
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 95.098900
iter 10 value 94.062405
iter 20 value 92.950032
iter 30 value 92.949310
iter 40 value 92.945843
iter 50 value 91.272037
iter 60 value 88.249152
iter 70 value 87.212916
iter 80 value 86.679129
iter 90 value 85.710961
iter 100 value 82.923815
final value 82.923815
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.830148
iter 10 value 93.099433
iter 20 value 92.953734
iter 30 value 92.938381
iter 40 value 92.246203
iter 50 value 90.222149
iter 60 value 90.192584
iter 70 value 90.192261
iter 80 value 88.690126
iter 90 value 88.504064
iter 100 value 88.470456
final value 88.470456
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 123.685006
iter 10 value 117.892282
iter 20 value 117.702004
iter 30 value 117.534237
iter 40 value 107.723857
iter 50 value 107.186241
iter 60 value 107.183718
final value 107.183493
converged
Fitting Repeat 2
# weights: 507
initial value 134.203461
iter 10 value 117.767214
iter 20 value 117.745091
iter 30 value 107.443720
iter 40 value 106.806547
iter 50 value 106.794717
iter 60 value 106.764299
final value 106.764215
converged
Fitting Repeat 3
# weights: 507
initial value 150.578481
iter 10 value 117.874219
iter 20 value 117.615569
iter 30 value 109.122525
iter 40 value 106.481194
iter 50 value 102.445448
iter 60 value 102.412027
iter 70 value 102.148967
iter 80 value 102.090807
iter 90 value 102.046774
iter 100 value 100.878130
final value 100.878130
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 135.839554
iter 10 value 117.551781
iter 20 value 117.507890
iter 30 value 117.501912
iter 40 value 116.489708
iter 50 value 106.492062
iter 60 value 103.047426
iter 70 value 102.986368
iter 80 value 102.982244
iter 90 value 102.981801
iter 100 value 102.981693
final value 102.981693
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.608030
iter 10 value 117.619267
iter 20 value 117.614482
iter 30 value 117.609540
iter 40 value 117.552836
final value 117.551453
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Feb 28 05:56:02 2023
***********************************************
Number of test functions: 8
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 8 test functions, 0 errors, 0 failures
Number of test functions: 8
Number of errors: 0
Number of failures: 0
Warning messages:
1: The `.data` argument of `add_column()` must have unique names as of tibble
3.0.0.
ℹ Use `.name_repair = "minimal"`.
ℹ The deprecated feature was likely used in the tibble package.
Please report the issue at <https://github.com/tidyverse/tibble/issues>.
2: `repeats` has no meaning for this resampling method.
3: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
53.827 1.459 66.745
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 37.751 | 0.581 | 38.332 | |
| FreqInteractors | 0.284 | 0.007 | 0.295 | |
| calculateAAC | 0.076 | 0.004 | 0.080 | |
| calculateAutocor | 0.742 | 0.025 | 0.766 | |
| calculateBE | 0.237 | 0.007 | 0.245 | |
| calculateCTDC | 0.144 | 0.001 | 0.144 | |
| calculateCTDD | 0.899 | 0.028 | 0.927 | |
| calculateCTDT | 0.303 | 0.000 | 0.303 | |
| calculateCTriad | 0.472 | 0.004 | 0.476 | |
| calculateDC | 0.129 | 0.007 | 0.137 | |
| calculateF | 0.698 | 0.005 | 0.702 | |
| calculateKSAAP | 0.156 | 0.004 | 0.160 | |
| calculateQD_Sm | 2.394 | 0.067 | 2.462 | |
| calculateTC | 2.417 | 0.072 | 2.489 | |
| calculateTC_Sm | 0.341 | 0.000 | 0.341 | |
| corr_plot | 37.970 | 0.459 | 38.432 | |
| enrichfindP | 0.421 | 0.033 | 16.104 | |
| enrichfind_hp | 0.042 | 0.003 | 1.295 | |
| enrichplot | 0.339 | 0.015 | 0.356 | |
| filter_missing_values | 0.002 | 0.000 | 0.002 | |
| getFASTA | 0.848 | 0.004 | 8.634 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.001 | 0.002 | |
| plotPPI | 0.072 | 0.006 | 0.078 | |
| pred_ensembel | 18.026 | 0.304 | 15.995 | |
| var_imp | 39.834 | 0.912 | 40.748 | |