Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HiCBricks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 893/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.17.0 (landing page) Koustav Pal
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: HiCBricks |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HiCBricks_1.17.0.tar.gz |
StartedAt: 2023-02-28 05:36:29 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 05:40:53 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 264.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HiCBricks_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HiCBricks.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘IntroductionToHiCBricks.rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.604 | 0.071 | 1.673 | |
BrickContainer_change_output_directory | 1.228 | 0.044 | 1.269 | |
BrickContainer_get_path_to_file | 1.125 | 0.056 | 1.181 | |
BrickContainer_list_chromosomes | 1.145 | 0.024 | 1.169 | |
BrickContainer_list_experiment_name | 1.134 | 0.020 | 1.155 | |
BrickContainer_list_files | 1.197 | 0.012 | 1.210 | |
BrickContainer_list_output_directory | 1.180 | 0.039 | 1.221 | |
BrickContainer_list_resolutions | 1.142 | 0.040 | 1.183 | |
BrickContainer_unlink_resolution | 2.543 | 0.060 | 2.599 | |
Brick_add_ranges | 2.61 | 0.06 | 2.67 | |
Brick_call_compartments | 2.381 | 0.068 | 2.452 | |
Brick_export_to_sparse | 3.323 | 0.108 | 3.431 | |
Brick_fetch_range_index | 1.350 | 0.032 | 1.382 | |
Brick_fetch_row_vector | 1.954 | 0.064 | 2.018 | |
Brick_get_bintable | 1.539 | 0.024 | 1.563 | |
Brick_get_chrominfo | 1.122 | 0.016 | 1.138 | |
Brick_get_entire_matrix | 1.552 | 0.068 | 1.618 | |
Brick_get_matrix | 1.525 | 0.052 | 1.577 | |
Brick_get_matrix_mcols | 1.513 | 0.040 | 1.553 | |
Brick_get_matrix_within_coords | 2.182 | 0.088 | 2.270 | |
Brick_get_ranges | 1.240 | 0.008 | 1.248 | |
Brick_get_values_by_distance | 1.690 | 0.088 | 1.778 | |
Brick_get_vector_values | 1.586 | 0.088 | 1.672 | |
Brick_list_matrices | 1.174 | 0.016 | 1.190 | |
Brick_list_matrix_mcols | 1.165 | 0.032 | 1.197 | |
Brick_list_mcool_normalisations | 0.000 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0.000 | 0.000 | 0.001 | |
Brick_list_rangekeys | 1.208 | 0.012 | 1.220 | |
Brick_list_ranges_mcols | 1.240 | 0.024 | 1.264 | |
Brick_load_cis_matrix_till_distance | 1.497 | 0.040 | 1.537 | |
Brick_load_data_from_mcool | 0 | 0 | 0 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 1.525 | 0.024 | 1.550 | |
Brick_local_score_differentiator | 2.379 | 0.048 | 2.429 | |
Brick_make_ranges | 0.012 | 0.000 | 0.011 | |
Brick_matrix_dimensions | 1.491 | 0.068 | 1.558 | |
Brick_matrix_exists | 1.471 | 0.040 | 1.511 | |
Brick_matrix_filename | 1.440 | 0.056 | 1.497 | |
Brick_matrix_isdone | 1.493 | 0.012 | 1.505 | |
Brick_matrix_issparse | 1.490 | 0.028 | 1.520 | |
Brick_matrix_maxdist | 1.501 | 0.044 | 1.545 | |
Brick_matrix_minmax | 1.471 | 0.044 | 1.515 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 1.111 | 0.032 | 1.143 | |
Brick_return_region_position | 1.264 | 0.028 | 1.296 | |
Brick_vizart_plot_heatmap | 2.728 | 0.076 | 2.804 | |
Create_many_Bricks | 1.196 | 0.032 | 1.228 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 1.275 | 0.024 | 1.300 | |