| Back to Build/check report for BioC 3.17: simplified long | 
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This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the HilbertCurve package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 900/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HilbertCurve 1.29.0  (landing page) Zuguang Gu 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HilbertCurve | 
| Version: 1.29.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HilbertCurve_1.29.0.tar.gz | 
| StartedAt: 2023-02-28 05:41:09 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 05:46:15 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 306.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: HilbertCurve.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HilbertCurve_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        15.747  0.199  15.947
hc_layer-GenomicHilbertCurve-method 12.127  0.315  12.443
GenomicHilbertCurve                  9.660  0.064  10.523
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘HilbertCurve.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HilbertCurve’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
  4.571   0.230   4.785 
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
| name | user | system | elapsed | |
| GenomicHilbertCurve-class | 0 | 0 | 0 | |
| GenomicHilbertCurve | 9.660 | 0.064 | 10.523 | |
| HilbertCurve-class | 0 | 0 | 0 | |
| HilbertCurve | 0.654 | 0.008 | 0.662 | |
| default_overlay | 0.000 | 0.000 | 0.001 | |
| hc_centered_text-HilbertCurve-method | 0.167 | 0.000 | 0.168 | |
| hc_layer-GenomicHilbertCurve-method | 12.127 | 0.315 | 12.443 | |
| hc_layer-HilbertCurve-method | 15.747 | 0.199 | 15.947 | |
| hc_layer-dispatch | 0 | 0 | 0 | |
| hc_level-HilbertCurve-method | 0.032 | 0.001 | 0.032 | |
| hc_map-GenomicHilbertCurve-method | 4.131 | 0.004 | 4.136 | |
| hc_normal_points-HilbertCurve-method | 0 | 0 | 0 | |
| hc_offset-HilbertCurve-method | 0.010 | 0.000 | 0.011 | |
| hc_png-HilbertCurve-method | 4.765 | 0.023 | 4.790 | |
| hc_points-GenomicHilbertCurve-method | 0.444 | 0.008 | 0.453 | |
| hc_points-HilbertCurve-method | 0.677 | 0.007 | 0.685 | |
| hc_points-dispatch | 0 | 0 | 0 | |
| hc_polygon-GenomicHilbertCurve-method | 0.519 | 0.003 | 0.523 | |
| hc_polygon-HilbertCurve-method | 0.109 | 0.003 | 0.113 | |
| hc_polygon-dispatch | 0 | 0 | 0 | |
| hc_rect-GenomicHilbertCurve-method | 0.357 | 0.004 | 0.360 | |
| hc_rect-HilbertCurve-method | 0.08 | 0.00 | 0.08 | |
| hc_rect-dispatch | 0 | 0 | 0 | |
| hc_segmented_points-HilbertCurve-method | 0 | 0 | 0 | |
| hc_segments-GenomicHilbertCurve-method | 0.609 | 0.004 | 0.612 | |
| hc_segments-HilbertCurve-method | 0.092 | 0.003 | 0.097 | |
| hc_segments-dispatch | 0 | 0 | 0 | |
| hc_text-GenomicHilbertCurve-method | 0.288 | 0.004 | 0.292 | |
| hc_text-HilbertCurve-method | 0.068 | 0.003 | 0.072 | |
| hc_text-dispatch | 0.000 | 0.000 | 0.001 | |
| is_white | 0.001 | 0.000 | 0.000 | |
| show-HilbertCurve-method | 0.009 | 0.000 | 0.009 | |
| unzoom-HilbertCurve-method | 0.007 | 0.000 | 0.008 | |
| zoom-HilbertCurve-method | 0.004 | 0.004 | 0.008 | |