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This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4266
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CHECK results for HilbertCurve on kunpeng1


To the developers/maintainers of the HilbertCurve package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 900/2171HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.29.0  (landing page)
Zuguang Gu
Snapshot Date: 2023-02-27 07:53:22 -0000 (Mon, 27 Feb 2023)
git_url: https://git.bioconductor.org/packages/HilbertCurve
git_branch: master
git_last_commit: 86968d4
git_last_commit_date: 2022-11-01 15:11:58 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: HilbertCurve
Version: 1.29.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HilbertCurve_1.29.0.tar.gz
StartedAt: 2023-02-28 05:41:09 -0000 (Tue, 28 Feb 2023)
EndedAt: 2023-02-28 05:46:15 -0000 (Tue, 28 Feb 2023)
EllapsedTime: 306.4 seconds
RetCode: 0
Status:   OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HilbertCurve_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        15.747  0.199  15.947
hc_layer-GenomicHilbertCurve-method 12.127  0.315  12.443
GenomicHilbertCurve                  9.660  0.064  10.523
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘HilbertCurve.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HilbertCurve
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
  4.571   0.230   4.785 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class000
GenomicHilbertCurve 9.660 0.06410.523
HilbertCurve-class000
HilbertCurve0.6540.0080.662
default_overlay0.0000.0000.001
hc_centered_text-HilbertCurve-method0.1670.0000.168
hc_layer-GenomicHilbertCurve-method12.127 0.31512.443
hc_layer-HilbertCurve-method15.747 0.19915.947
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0320.0010.032
hc_map-GenomicHilbertCurve-method4.1310.0044.136
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method0.0100.0000.011
hc_png-HilbertCurve-method4.7650.0234.790
hc_points-GenomicHilbertCurve-method0.4440.0080.453
hc_points-HilbertCurve-method0.6770.0070.685
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.5190.0030.523
hc_polygon-HilbertCurve-method0.1090.0030.113
hc_polygon-dispatch000
hc_rect-GenomicHilbertCurve-method0.3570.0040.360
hc_rect-HilbertCurve-method0.080.000.08
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method000
hc_segments-GenomicHilbertCurve-method0.6090.0040.612
hc_segments-HilbertCurve-method0.0920.0030.097
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.2880.0040.292
hc_text-HilbertCurve-method0.0680.0030.072
hc_text-dispatch0.0000.0000.001
is_white0.0010.0000.000
show-HilbertCurve-method0.0090.0000.009
unzoom-HilbertCurve-method0.0070.0000.008
zoom-HilbertCurve-method0.0040.0040.008