| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:43 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the IntOMICS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IntOMICS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 978/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IntOMICS 0.99.24  (landing page) Pacinkova Anna 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: IntOMICS | 
| Version: 0.99.24 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:IntOMICS.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings IntOMICS_0.99.24.tar.gz | 
| StartedAt: 2023-02-28 06:28:00 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 06:34:30 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 390.5 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: IntOMICS.Rcheck | 
| Warnings: 1 | 
##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:IntOMICS.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings IntOMICS_0.99.24.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/IntOMICS.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘IntOMICS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IntOMICS’ version ‘0.99.24’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IntOMICS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘IntOMICS_vignette.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/IntOMICS.Rcheck/00check.log’
for details.
IntOMICS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL IntOMICS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘IntOMICS’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IntOMICS)
IntOMICS.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IntOMICS)
> 
> test_check("IntOMICS")
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 23 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• empty test (1)
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 23 ]
> 
> proc.time()
   user  system elapsed 
 18.323   1.307  19.619 
IntOMICS.Rcheck/IntOMICS-Ex.timings
| name | user | system | elapsed | |
| B_prior_mat_weighted | 0 | 0 | 0 | |
| CPDAGs_sim1 | 0 | 0 | 0 | |
| CPDAGs_sim2 | 0.000 | 0.000 | 0.001 | |
| MCMC_sapling_res | 0.001 | 0.000 | 0.000 | |
| beta_tuning | 0 | 0 | 0 | |
| bn_module | 0 | 0 | 0 | |
| dens_edge_weights | 3.966 | 0.212 | 4.180 | |
| edge_weights | 1.668 | 0.032 | 1.700 | |
| emp_b_heatmap | 3.030 | 0.072 | 3.103 | |
| estimated_beta | 0 | 0 | 0 | |
| estimated_len | 0 | 0 | 0 | |
| ggraph_weighted_net | 0.000 | 0.001 | 0.000 | |
| omics_module | 1.393 | 0.059 | 1.455 | |
| rms | 0 | 0 | 0 | |
| trace_plots | 0.001 | 0.000 | 0.001 | |
| weighted_net | 2.405 | 0.024 | 2.429 | |