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This page was generated on 2023-03-01 07:38:43 -0000 (Wed, 01 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4266
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BUILD results for InteractiveComplexHeatmap on kunpeng1


To the developers/maintainers of the InteractiveComplexHeatmap package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InteractiveComplexHeatmap.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 972/2171HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InteractiveComplexHeatmap 1.7.1  (landing page)
Zuguang Gu
Snapshot Date: 2023-02-27 07:53:22 -0000 (Mon, 27 Feb 2023)
git_url: https://git.bioconductor.org/packages/InteractiveComplexHeatmap
git_branch: master
git_last_commit: ab59feb
git_last_commit_date: 2023-02-14 10:39:57 -0000 (Tue, 14 Feb 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: InteractiveComplexHeatmap
Version: 1.7.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data InteractiveComplexHeatmap
StartedAt: 2023-02-27 14:44:18 -0000 (Mon, 27 Feb 2023)
EndedAt: 2023-02-27 14:45:35 -0000 (Mon, 27 Feb 2023)
EllapsedTime: 77.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data InteractiveComplexHeatmap
###
##############################################################################
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* checking for file ‘InteractiveComplexHeatmap/DESCRIPTION’ ... OK
* preparing ‘InteractiveComplexHeatmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘InteractiveComplexHeatmap.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "1. How to visualize heatmaps interactively", and the latter is "How to visualize complex heatmaps interactively". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘InteractiveComplexHeatmap.Rmd’

--- re-building ‘decoration.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "4. Decorations on heatmaps", and the latter is "Decorations on heatmaps". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘decoration.Rmd’

--- re-building ‘deseq2_app.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "6. A Shiny app for visualizing DESeq2 results", and the latter is "A Shiny app for visualizing DESeq2 results". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘deseq2_app.Rmd’

--- re-building ‘from_scratch.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "7. Implement interactive heatmap from scratch", and the latter is "Implement interactive heatmap from scratch". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
Could not fetch https://user-images.githubusercontent.com/449218/113612404-1479aa80-9650-11eb-8647-0f06cd1b7779.gif
HttpExceptionRequest Request {
  host                 = "user-images.githubusercontent.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/449218/113612404-1479aa80-9650-11eb-8647-0f06cd1b7779.gif"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 ResponseTimeout
Error: processing vignette 'from_scratch.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘from_scratch.Rmd’

--- re-building ‘implementation.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "2. How interactive complex heatmap is implemented", and the latter is "How interactive complex heatmap is implemented". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘implementation.Rmd’

--- re-building ‘interactivate_indirect.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap()", and the latter is "Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap()". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘interactivate_indirect.Rmd’

--- re-building ‘share.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "8. Share interactive heatmaps to collaborators", and the latter is "Share interactive heatmaps to collaborators". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘share.Rmd’

--- re-building ‘shiny_dev.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "3. Functions for Shiny app development", and the latter is "Functions for Shiny app development". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘shiny_dev.Rmd’

SUMMARY: processing the following file failed:
  ‘from_scratch.Rmd’

Error: Vignette re-building failed.
Execution halted