Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:45 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MMDiff2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MMDiff2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1224/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MMDiff2 1.27.0 (landing page) Gabriele Schweikert
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: MMDiff2 |
Version: 1.27.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MMDiff2.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MMDiff2_1.27.0.tar.gz |
StartedAt: 2023-02-28 08:40:32 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 08:48:44 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 491.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MMDiff2.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MMDiff2.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MMDiff2_1.27.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/MMDiff2.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘MMDiff2/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MMDiff2’ version ‘1.27.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MMDiff2’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE DBAmmd: no visible global function definition for ‘new’ getReads: no visible global function definition for ‘IRangesList’ Undefined global functions or variables: IRangesList new Consider adding importFrom("methods", "new") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed compDists 61.201 1.344 62.547 DBAmmd-Accessors 15.516 0.420 15.936 plotPeak 8.990 0.467 9.470 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘MMDiff2.Rnw’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.17-bioc/meat/MMDiff2.Rcheck/00check.log’ for details.
MMDiff2.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL MMDiff2 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘MMDiff2’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MMDiff2)
MMDiff2.Rcheck/MMDiff2-Ex.timings
name | user | system | elapsed | |
Cfp1-Peaks | 0.001 | 0.000 | 0.000 | |
DBAmmd-Accessors | 15.516 | 0.420 | 15.936 | |
DBAmmd-class | 0.042 | 0.000 | 0.042 | |
MMD | 0.001 | 0.000 | 0.001 | |
compDists | 61.201 | 1.344 | 62.547 | |
compHists | 4.462 | 0.284 | 4.747 | |
compPvals | 1.398 | 0.096 | 1.495 | |
estimateFragmentCenters | 1.715 | 0.136 | 1.851 | |
getPeakReads | 0.337 | 0.000 | 0.363 | |
mm9-Genes | 0.001 | 0.000 | 0.000 | |
plotDISTS4Peak | 1.279 | 0.084 | 1.362 | |
plotDists | 1.311 | 0.128 | 1.438 | |
plotPeak | 8.990 | 0.467 | 9.470 | |
reportResults | 1.277 | 0.152 | 1.429 | |
runShinyMMDiff2 | 0 | 0 | 0 | |
server.MMDiff2 | 0 | 0 | 0 | |
ui.MMDiff2 | 0 | 0 | 0 | |